View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10919_low_11 (Length: 366)

Name: NF10919_low_11

Description: NF10919

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10919_low_11

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 163; E-Value: 5e-87

Query Start/End: Original strand, 153 - 323

Target Start/End: Original strand, 28447982 - 28448152

Alignment:

Q	153	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	252	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28447982	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	28448081	T

Q	253	ctatttctataggcgtcaggcctacagacctcccctctacatcgatgatgatggatgctagtggggccggg	323	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28448082	ctatttctataggcatcagacctacagacctcccctctacatcgatgatgatggatgctagtggggccggg	28448152	T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 54; E-Value: 6e-22

Query Start/End: Original strand, 156 - 233

Target Start/End: Original strand, 18690607 - 18690684

Alignment:

Q	156	gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaat	233	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	18690607	gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat	18690684	T

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