View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10919_low_12 (Length: 351)

Name: NF10919_low_12
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10919_low_12
NF10919_low_12
[»] chr1 (2 HSPs)
chr1 (19-334)||(3702556-3702871)
chr1 (19-334)||(3698868-3699183)
[»] chr4 (2 HSPs)
chr4 (231-334)||(52250765-52250868)
chr4 (231-266)||(52262407-52262442)
[»] chr2 (1 HSPs)
chr2 (233-334)||(17602793-17602894)
[»] chr3 (1 HSPs)
chr3 (170-225)||(39718869-39718924)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 3702871 - 3702556
Alignment:
Q  19 tgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagatta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||    
T  3702871 tgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagatta 3702772  T
Q  119 tgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3702771 tgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatcca 3702672  T
Q  219 ttttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaaca 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3702671 ttttctcacctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaaca 3702572  T
Q  319 agaccacctacctttc 334  Q
    ||||||||||||||||    
T  3702571 agaccacctacctttc 3702556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 3699183 - 3698868
Alignment:
Q  19 tgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagatta 118  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||       |||||||||||||||||| |||||||||||    
T  3699183 tgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaatcttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagatta 3699084  T
Q  119 tgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3699083 tgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatcca 3698984  T
Q  219 ttttctcgcctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaaca 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  3698983 ttttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtccttttctgcaaaca 3698884  T
Q  319 agaccacctacctttc 334  Q
    ||||||||||||||||    
T  3698883 agaccacctacctttc 3698868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 52250765 - 52250868
Alignment:
Q  231 tcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaacaagaccacctacc 330  Q
    |||| |||||||| |||||||||||||||||||||| |||  || ||||||| || | || |||||| ||  |||| |||||||||||||||||||| ||    
T  52250765 tcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctcttctgcaaacaagaccaccttcc 52250864  T
Q  331 tttc 334  Q
    ||||    
T  52250865 tttc 52250868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 52262407 - 52262442
Alignment:
Q  231 tcatctcacaaatgttatgcaaaacacaacaagcac 266  Q
    ||||||||||||| ||||||||||||||||||||||    
T  52262407 tcatctcacaaatattatgcaaaacacaacaagcac 52262442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 17602894 - 17602793
Alignment:
Q  233 atctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagtccttttctgcaaacaagaccacctacctt 332  Q
    ||||||||||| ||||| |  ||||||||||||| |||  ||||||| |||||||| | ||| | |||||||||||||| ||||||   |||||||||||    
T  17602894 atctcacaaatattatgaagcacacaacaagcaccaagaacaacaggtaaatcttgcaacttaatttcagtccttttcttcaaacacccccacctacctt 17602795  T
Q  333 tc 334  Q
    ||    
T  17602794 tc 17602793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
Q  170 tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc 225  Q
    ||||||| |||||||||||| | || ||||| | ||||||||||||||||||||||    
T  39718924 tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc 39718869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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