View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10919_low_16 (Length: 288)
Name: NF10919_low_16
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 38901997 - 38902272
Alignment:
| Q |
1 |
gaaaaactaaccatgcaatgaagaagattttgctcttttgacaattctcagcagtgacaaaatcaaagtcaaaaacagcatatctgcaatcattatcagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38901997 |
gaaaaactaaccatgcaatgaagaagattttgctcttttgacaattctcagcagtgacaaaatcgaagtcaaaaacagcatatctgcaatcattatcagg |
38902096 |
T |
|
| Q |
101 |
caaagacgcagcaaaatcgtcataactctcagcaggaccaccagtcttctcaaccacaacctcccttttcttttcatcaaccttaaagatgacataacga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38902097 |
caaagacgcagcaaaatcgtcataactctcagcaggaccaccagtcttctcaaccacaacctcccttttcttttcatcaaccttaaagatgacataacga |
38902196 |
T |
|
| Q |
201 |
tggaccttcttttgcttcaattccatgaaggtgtttttgctgttatcatcaacacccatgccagatgaagcatttg |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38902197 |
tggaccttcttttgcttcaattccatgaaggtgtttttgctgttatcatcaacacccatgccagatgaagcatttg |
38902272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 33749823 - 33749665
Alignment:
| Q |
5 |
aactaaccatgcaatgaagaagattttgctcttttgacaattctcagcagtgacaaaatcaaagtcaaaaacagcatatctgcaatcattatcaggcaaa |
104 |
Q |
| |
|
|||| ||||||| || || ||||||||||||||||| || ||||||||||| || |||||||||||||| || |||||||| |||||||| |||||||| |
|
|
| T |
33749823 |
aactgaccatgcgataaaaaagattttgctcttttggcagttctcagcagtcacgaaatcaaagtcaaagactgcatatctacaatcattttcaggcaag |
33749724 |
T |
|
| Q |
105 |
gacgcagcaaaatcgtcataactctcagcaggaccaccagtcttctcaaccacaacctc |
163 |
Q |
| |
|
|| |||| ||||| ||||| ||||||| ||| || ||||| || || ||||||||||| |
|
|
| T |
33749723 |
gatgcagtgaaatcatcatagctctcagaagggcctccagttttttcgaccacaacctc |
33749665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 27916984 - 27917086
Alignment:
| Q |
10 |
accatgcaatgaagaagattttgctcttttgacaattctcagcagtgacaaaatcaaagtcaaaaacagcatatctgcaatcattatcaggcaaagacgc |
109 |
Q |
| |
|
||||||||||||||||||| |||||||| | || || ||| |||||||||||||||| ||||| ||||||||||| ||||||| || ||||||||| || |
|
|
| T |
27916984 |
accatgcaatgaagaagatcttgctcttacggcagttgtcaacagtgacaaaatcaaaatcaaagacagcatatctacaatcatcattaggcaaagaagc |
27917083 |
T |
|
| Q |
110 |
agc |
112 |
Q |
| |
|
||| |
|
|
| T |
27917084 |
agc |
27917086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University