View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10919_low_5 (Length: 569)
Name: NF10919_low_5
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 43658277 - 43658651
Alignment:
| Q |
11 |
ggggatttcaatgcggcgcgcagggtgaaagaaagaaggtcgactcggcgtg------acacaa-gaattttgtgccttataataattttattcaagaaa |
103 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||| |||||||||| || ||| |||||||| ||||| ||||||||||||| |||||| |
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| T |
43658277 |
ggggatttcaatgcggtgcgcagggtggaagaaagaaggtcaactcggcgtgggggtgacgcaacgaattttgcgccttttaataattttattgaagaaa |
43658376 |
T |
|
| Q |
104 |
atatgctaattcatttaccgttgtgcagtctgaggtccacatggtttaagggcgatggcgtatctatgaataggattgacagatttttgctattggagga |
203 |
Q |
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||||||||||| |||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43658377 |
atatgctaattgatttaccgttatgcggtctgaggttcacgtggtttaagggcgatggcgtatctatgaataggattgacagatttttgctatcggagga |
43658476 |
T |
|
| Q |
204 |
gtggtgcttaagatggcctaatagtcttcagattggtcttcttcgtggggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggt |
303 |
Q |
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| T |
43658477 |
gtggtgcttaagatggcctaatagtcttcagattggtcttctttgtggggtttccgatcattgcccgcttcagttgtcagtggatgaggaaaattggggt |
43658576 |
T |
|
| Q |
304 |
cctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagtttgtagtcgaagtagtttta |
378 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |
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| T |
43658577 |
cctcatcctactcgtgtgttgaaatgctggcaagacatgtctggttataaacagtttgtagttgaagtagtttta |
43658651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 405 - 552
Target Start/End: Original strand, 43658730 - 43658877
Alignment:
| Q |
405 |
tgaagattttttctctcccaatgatttcaattgtgaatgtggtggttaggaagtatttcatagaatatagttcccgtgtaagttgtttgtcttgtgagtt |
504 |
Q |
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| T |
43658730 |
tgaagattttttctctcccaatgatttctattgtgaatgtggtggctaggaagtatttcattgaatatagttcccgtgtaagttgtttgtcttatgagtt |
43658829 |
T |
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| Q |
505 |
ttctatcatgtacttaaatgagttttaggaaaatatttaatttgttat |
552 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43658830 |
ttctctcatgtacttaaatgagttttaggaaaatatttaatttgttat |
43658877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 43659357 - 43659426
Alignment:
| Q |
470 |
tatagttcccgtgtaagttgtttgtcttgtgagttttctatcatgtacttaaatgagttttaggaaaata |
539 |
Q |
| |
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| T |
43659357 |
tatagttcccgtgtaagtggtttgtcttgtgagttttctatcatgtacttaaatgatttttaggaaaata |
43659426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 362
Target Start/End: Original strand, 23052477 - 23052634
Alignment:
| Q |
205 |
tggtgcttaagatggcctaatagtcttcagattggtcttcttcgtggggtttccgatcattacccgcttcagttgtcggtggatgaggaaaattggggtc |
304 |
Q |
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||||||||||||||||| || | |||||||||| |||||| | ||| || || ||||| | ||| ||| ||| || |||||| ||||||||| ||| | |
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| T |
23052477 |
tggtgcttaagatggccaaactgccttcagattgctcttctccatggtgtatcggatcactgccctctttagtagtttgtggataaggaaaatttgggac |
23052576 |
T |
|
| Q |
305 |
ctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagtttgt |
362 |
Q |
| |
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| ||||| |||| ||| ||| || |||||||| ||||||||||||||||||||||| |
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| T |
23052577 |
cgcgtccgtctcgaatgttgaagtgttggcaagagatgcctggttataagcagtttgt |
23052634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 411 - 552
Target Start/End: Complemental strand, 34314327 - 34314181
Alignment:
| Q |
411 |
ttttttctctcccaatgatttcaattgtgaatgtggtggt-taggaagtatttcatagaatatagttcccgtgtaagtt----gtttgtcttgtgagttt |
505 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||||| ||| |||||||||||||||||||||||||||| |||||| || || |||||||||||||| |
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| T |
34314327 |
ttttttttctcccaatgacttcaactgcgaatgtcgtgtactaggaagtatttcatagaatatagttcctgtgtaatttagctgtctgtcttgtgagttt |
34314228 |
T |
|
| Q |
506 |
tctatcatgtacttaaatgagttttaggaaaatatttaatttgttat |
552 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||| || |||||| |
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| T |
34314227 |
tctttcatgtacttaaatgagttttaagaaaatatttcatgtgttat |
34314181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 31677528 - 31677425
Alignment:
| Q |
259 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
358 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| ||| | || |||||| |||||||||||||| ||||| || |||| |
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| T |
31677528 |
gatcattgtccgcttcagttgtcggttgatgaggaaaactggggaccgcgtccaactagaatgctgaaatgttggcaagacatgccgggttacaaacagt |
31677429 |
T |
|
| Q |
359 |
ttgt |
362 |
Q |
| |
|
|||| |
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| T |
31677428 |
ttgt |
31677425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 552
Target Start/End: Complemental strand, 32794347 - 32794293
Alignment:
| Q |
498 |
gtgagttttctatcatgtacttaaatgagttttaggaaaatatttaatttgttat |
552 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||||||||| || |||||| |
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| T |
32794347 |
gtgagttttctttcatgtactgaaatgagttttaagaaaatatttcatgtgttat |
32794293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 362
Target Start/End: Original strand, 3542644 - 3542747
Alignment:
| Q |
259 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
358 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||| || ||||| ||| | || |||||| |||||||| ||||| |||||||| |||| |
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| T |
3542644 |
gatcattgtccgcttcagctgtcggttgatgaggaaaattggggaccgcgtccaactagaatgctgaaatgttggcaagatatgccgggttataaacagt |
3542743 |
T |
|
| Q |
359 |
ttgt |
362 |
Q |
| |
|
|||| |
|
|
| T |
3542744 |
ttgt |
3542747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 362
Target Start/End: Complemental strand, 5811178 - 5811075
Alignment:
| Q |
259 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
358 |
Q |
| |
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||||||| ||||||||||| || ||||||||| |||||||||| || ||||| || | ||| ||||| |||||||| ||||||| |||||||||| |
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| T |
5811178 |
gatcattgtccgcttcagttatctgtggatgagaaaaattggggaccccgtccgtctagaatgttaaaatgttggcaagatttgcctggctataagcagt |
5811079 |
T |
|
| Q |
359 |
ttgt |
362 |
Q |
| |
|
|||| |
|
|
| T |
5811078 |
ttgt |
5811075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 6825950 - 6825850
Alignment:
| Q |
259 |
gatcattacccgcttcagttgtcggtggatgaggaaaattggggtcctcgtcctactcgtgtgtggaaatgctggcaagacatgcctggttataagcagt |
358 |
Q |
| |
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||||||| |||| | |||||||| |||||||||||||||||||| || ||||| || | || |||||| |||||||| ||| | ||||||||||||| |
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| T |
6825950 |
gatcattgcccgttgcagttgtctgtggatgaggaaaattggggaccccgtccgtctagaatgctgaaatgttggcaagagatgtcgggttataagcagt |
6825851 |
T |
|
| Q |
359 |
t |
359 |
Q |
| |
|
| |
|
|
| T |
6825850 |
t |
6825850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 353
Target Start/End: Original strand, 17603942 - 17603971
Alignment:
| Q |
324 |
gaaatgctggcaagacatgcctggttataa |
353 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
17603942 |
gaaatgctggcaagacatgcctggttataa |
17603971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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