View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10919_low_6 (Length: 499)
Name: NF10919_low_6
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_6 |
 | |
|
| [»] scaffold1396 (1 HSPs) |
| | |
|
| [»] scaffold0658 (1 HSPs) |
| | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 27 - 491
Target Start/End: Complemental strand, 24647180 - 24646716
Alignment:
| Q |
27 |
aattatgttagtagttgtgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatcattacaaataaaatt |
126 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647180 |
aattatgttagtagctatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatcattacaaataaaatt |
24647081 |
T |
|
| Q |
127 |
cacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattcaagtatgctcagttacactgtttgcatcagctagagc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24647080 |
cacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattcaagtatgctcagttacactgtttgcatcagctagagc |
24646981 |
T |
|
| Q |
227 |
ctccaccccatgcttgtgatccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattattnnn |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24646980 |
ctccaccccatgcttgtgatccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattattaaa |
24646881 |
T |
|
| Q |
327 |
nnnnttcttgcacattgttacaaaagtttatagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaa |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24646880 |
aaaattcttgcacattgttacaaaagtttatagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaa |
24646781 |
T |
|
| Q |
427 |
gccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgct |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24646780 |
gccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctctgct |
24646716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 27 - 488
Target Start/End: Complemental strand, 24638251 - 24637784
Alignment:
| Q |
27 |
aattatgttagtagttgtgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatcattacaaataaaatt |
126 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638251 |
aattatgttagtagttatgttggtaattattttgtaattactctcatgtttgactccacttgtaactgtatatatactcttgatcattacaaataaaatt |
24638152 |
T |
|
| Q |
127 |
cacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacag----attcaagtatgctcagttacactgtttgcatcagcta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24638151 |
cacggattgatttcctttaattagtacctccttttgtaattcaagtctgcaagcaacagattaattcaagtatgctcagttacactgtttgcatcagcta |
24638052 |
T |
|
| Q |
223 |
gagcctccaccccatgcttgtgatccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattat |
322 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24638051 |
gagcctccaccccatgcttgtgctccctgctgcacttgctctaagcttggttttcttattttatctaaatattattattgatcacattgaatttcattat |
24637952 |
T |
|
| Q |
323 |
tnnnnnnnttcttgcac--attgttacaaaagtttatagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatggtttttag |
420 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
24637951 |
taaaaaaattcttgcacatattgttacaaaagtttatagtcagtctatgtgactaactaatcagttattcttctatagattctaagctcatggactttag |
24637852 |
T |
|
| Q |
421 |
gatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaacctgtctctctct |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24637851 |
gatgaagccaagtaattggctcatgtttaaaaatctttccttctgtaaagataaaactgtctctctct |
24637784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 160 - 412
Target Start/End: Complemental strand, 24716712 - 24716457
Alignment:
| Q |
160 |
ttgtaattcaagtctgcaagcaacagattcaagtatgctcagttacactgtttgcatcagctagagcctccaccccatgcttgtgatccctgctgcactt |
259 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||| |||||||| |||||||||| ||| || |||| | |
|
|
| T |
24716712 |
ttgtaattcaagtctgcaaggaacagattcaataatgctcagtgacattgtttgcatcagctaga-cctccacctcatgcttgtgttccttgttgcaaat |
24716614 |
T |
|
| Q |
260 |
gctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattatt----nnnnnnnttcttgcacattgttacaaaagttt |
355 |
Q |
| |
|
||||||| |||||| |||||| |||||||| ||||||||| |||||| |||||||||||||| | |||| | ||||| || |||||| |
|
|
| T |
24716613 |
gctctaatgttggtattcttactttatctacatgttattactgatcatattgaatttcattactaaaacaaaaaaatcttattcgttgttgcagaagttt |
24716514 |
T |
|
| Q |
356 |
atagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatg |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24716513 |
atagtgagtctatgtgacttactaatcagttattcttctatagattctaagctcatg |
24716457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 368 - 475
Target Start/End: Complemental strand, 24713341 - 24713235
Alignment:
| Q |
368 |
tgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgta |
467 |
Q |
| |
|
|||||||||| | |||||| ||| ||| ||||||||| |||||| |||||||||||||| ||||||||| ||||| |||| |||||||||||||| || |
|
|
| T |
24713341 |
tgtgacttaccactcagtttttcacctaaggattctaagctcatggcttttaggatgaagctaagtaattgcctcat-tttatagatctttccttctata |
24713243 |
T |
|
| Q |
468 |
aagataaa |
475 |
Q |
| |
|
| |||||| |
|
|
| T |
24713242 |
atgataaa |
24713235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 475
Target Start/End: Complemental strand, 24740847 - 24740722
Alignment:
| Q |
350 |
aagtttatagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaagccaagtaattggctcatgttta |
449 |
Q |
| |
|
||||||||||| | ||| ||| |||| | ||| ||| |||| ||||||||||||||| |||||| || || |||||||| || || |||||||||||| | |
|
|
| T |
24740847 |
aagtttatagtgaatctgtgtcacttgccaattagtaattcatctatagattctaagctcatggcttgtaagatgaagcgaaatatttggctcatgttaa |
24740748 |
T |
|
| Q |
450 |
aagatctttccttctgtaaagataaa |
475 |
Q |
| |
|
| |||||||||| | |||||||||| |
|
|
| T |
24740747 |
tatatctttccttttataaagataaa |
24740722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 476
Target Start/End: Complemental strand, 24691206 - 24691080
Alignment:
| Q |
350 |
aagtttatagtcagtctatgtgacttactaatcagttattcttctatagattctaagttcatggtttttaggatgaagccaagtaattggctcatgttta |
449 |
Q |
| |
|
||||||||||| | ||| |||||||| | ||||||||| ||||| |||||||||||| || | | |||||| || |||| || |||||| ||||| || | |
|
|
| T |
24691206 |
aagtttatagtgaatctgtgtgacttgcgaatcagttactcttcaatagattctaagctcgtagattttagtattaagctaaataattgtctcatattca |
24691107 |
T |
|
| Q |
450 |
aagatctttccttctgtaaagataaac |
476 |
Q |
| |
|
||||||||||||| | ||||||||| |
|
|
| T |
24691106 |
ttgatctttccttctatcaagataaac |
24691080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 439 - 484
Target Start/End: Complemental strand, 24716463 - 24716418
Alignment:
| Q |
439 |
gctcatgtttaaagatctttccttctgtaaagataaacctgtctct |
484 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
24716463 |
gctcatgtttaaagatttttccttctataaagataaacctatctct |
24716418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 476
Target Start/End: Complemental strand, 24639812 - 24639751
Alignment:
| Q |
415 |
ttttaggatgaagccaagtaattggctcatgtttaaagatctttccttctgtaaagataaac |
476 |
Q |
| |
|
||||| |||||||| || |||||| |||||||| | |||||||||||||| | ||||||||| |
|
|
| T |
24639812 |
ttttacgatgaagctaaataattgtctcatgttcatagatctttccttctatcaagataaac |
24639751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1396 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1396
Description:
Target: scaffold1396; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 558 - 481
Alignment:
| Q |
246 |
tccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattatt |
323 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||| ||||||| |||| |||||||||| |||||||||| |
|
|
| T |
558 |
tccctgctgcaattgctctaaggtgagttttcttactttatttaaatgtcattactgatcacattatgtttcattatt |
481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0658 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0658
Description:
Target: scaffold0658; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 8330 - 8253
Alignment:
| Q |
246 |
tccctgctgcacttgctctaaggttggttttcttattttatctaaatgttattattgatcacattgaatttcattatt |
323 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||||| ||||||| |||| |||||||||| |||||||||| |
|
|
| T |
8330 |
tccctgctgcaattgctctaaggtaagttttcttactttatttaaatgtcattactgatcacattatgtttcattatt |
8253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 7339 - 7395
Alignment:
| Q |
89 |
taactgtatatatactcttgatcattacaaataaaattcacggattgatttccttta |
145 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||| |
|
|
| T |
7339 |
taactatatatatactcttgatcattatcaatgaaattcacgaattgatttccttta |
7395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 7260 - 7304
Alignment:
| Q |
27 |
aattatgttagtagttgtgttggtaattattttgtaattactctc |
71 |
Q |
| |
|
||||||||||||| || ||||||| |||| ||||||||||||||| |
|
|
| T |
7260 |
aattatgttagtaattatgttggttattactttgtaattactctc |
7304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University