View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10919_low_7 (Length: 465)
Name: NF10919_low_7
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 20528720 - 20529148
Alignment:
| Q |
19 |
gcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagt |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
20528720 |
gcaataacactttctattgtaaacaagataacaactcgtggtgaaaagatggatcaaactctgcttgttgaaaagatcttgagatctttaacaagcaagt |
20528819 |
T |
|
| Q |
119 |
tcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
20528820 |
tcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacatagtagtttacttgttcaagaacaacgcatgaa |
20528919 |
T |
|
| Q |
219 |
atctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagagaaagagggcgttcaagcaaa |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
20528920 |
atctcaaaaccaagaaactgatactgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagaggaagagggcgttcaagcaaa |
20529019 |
T |
|
| Q |
319 |
gaggaagatgtagaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaat |
418 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20529020 |
gaggaagatgtggaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaat |
20529119 |
T |
|
| Q |
419 |
tcaaattatgctgaatttaaagaaggtga |
447 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |
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|
| T |
20529120 |
tcaaattatgctgaatttgaagatggtga |
20529148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 3036349 - 3036780
Alignment:
| Q |
19 |
gcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagt |
118 |
Q |
| |
|
|||| ||| ||||||||||| || ||||| ||| | | ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||| |
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|
| T |
3036349 |
gcaagaacgctttctattgctaataagatgacatcacatggtgaaaagatggatcaaacactggttgttgagaagattctgagatctttaacaagtaagt |
3036448 |
T |
|
| Q |
119 |
tcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaa |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||||| |||| | ||| ||||| | |||||||| |||||||||||||||| || ||| || |
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|
| T |
3036449 |
tcaattatgtggtgtgctctattgaagaatctaatgatgtgactgcactcttcatcgatgaacttcagagtagcttacttgttcaagaacgacgcataaa |
3036548 |
T |
|
| Q |
219 |
atctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagagaaagagggcgttcaag-caa |
317 |
Q |
| |
|
|||||| || ||||||| |||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||| |||||||| |||| | |
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|
| T |
3036549 |
atctcagaatcaagaaattgatattgagcaagctttgaaggtttcgaatggaggaagaggatctatgggatatggtagaggaagagggcattcaggtgct |
3036648 |
T |
|
| Q |
318 |
agaggaagatgtagaggaagaattaac-aagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatggg-aaaca |
415 |
Q |
| |
|
||||||| |||| |||||||| ||| |||||| |||| || |||||||||||||||| |||||||||||||||||||||| ||||||| ||| | |
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|
| T |
3036649 |
agaggaaagggtaggggaagaatcaacaaagattctattgagtgttataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaa |
3036748 |
T |
|
| Q |
416 |
aattcaaattatgctgaatttaaagaaggtga |
447 |
Q |
| |
|
||| ||||||||||| ||||| |||| ||||| |
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|
| T |
3036749 |
aatgcaaattatgctcaatttgaagatggtga |
3036780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 16863096 - 16863492
Alignment:
| Q |
19 |
gcaataacactttctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagt |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| | |||||| |||||||||||||| || |||||||||||||| |||||||||||||||| || | |
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|
| T |
16863096 |
gcaataactctttctattgcaaacaagatgacaacacatggtgagaagatggatcaaacacttgttgttgaaaagattctgagatctttaacaagtaaat |
16863195 |
T |
|
| Q |
119 |
tcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaa |
218 |
Q |
| |
|
| ||||| ||| |||| || ||| | ||||| |||||||| || ||||| || ||||||||| | || || |||||||||||||||||||||| |||||| |
|
|
| T |
16863196 |
ttaattacgtgctgtgctcaattcatgaatcaaatgatgtaactacactctcaattaatgaacttcatagcagtttacttgttcaagaacaacgcatgaa |
16863295 |
T |
|
| Q |
219 |
atctcaaaaccaagaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagagaaagagggcgttcaag-caa |
317 |
Q |
| |
|
| ||||||| ||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||||| | |
|
|
| T |
16863296 |
aactcaaaatcaagaaattgatattgaacaagctttgaaggcatctaatggtggaagaggatctgtaggatatggtagaggaagagggcgttcaggtgtt |
16863395 |
T |
|
| Q |
318 |
agaggaagatgtagaggaagaattaacaa--gatttagttgaatgc-aataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaa |
412 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | ||||||||| | |||||||||||||| ||||||||||| |||||||||| |||||||||| |
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|
| T |
16863396 |
agaggaaggggtagaggaagaattaacaatggaagt-gttgaatgctacaaagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaa |
16863492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 11356809 - 11356874
Alignment:
| Q |
142 |
gaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaa |
207 |
Q |
| |
|
||||||||||||||||| |||| | |||||| |||| ||||| | ||||||||||||||||||| |
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|
| T |
11356809 |
gaagaatccaatgatgttacaattttatccattgatgagttacatactagtttacttgttcaagaa |
11356874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 312
Target Start/End: Complemental strand, 40613262 - 40612981
Alignment:
| Q |
31 |
tctattgcaaacaagataacaactcgtggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtgg |
130 |
Q |
| |
|
||||||||||| || || ||||| | |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
40613262 |
tctattgcaaataaaatgacaacacatggtgagaagatggatcaaacgctggttgttgaaaagattttgagatctttaacaagtaaattcaattatgtgg |
40613163 |
T |
|
| Q |
131 |
tgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaaatctcaaaacca |
230 |
Q |
| |
|
|||| || ||||||||||| || || || || ||||| || ||| |||| || |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40613162 |
tgtgttccattgaagaatcaaacgacgtcactacactatcaattgatgagttgcagagtagtttacttgttcaagaacaacacatgaaatctcaaaatca |
40613063 |
T |
|
| Q |
231 |
agaaactgattctgagcaagctttgaaggtttctaatggtggaagaggatctgtgggatatgggagagaaagagggcgttca |
312 |
Q |
| |
|
||| | |||| ||| ||||||||||||||||| ||||||| |||||| | ||||| ||||| |||| |||||| |||||| |
|
|
| T |
40613062 |
agacattgatgttgaacaagctttgaaggtttccaatggtgaaagaggtttcgtggggtatggtagaggaagaggacgttca |
40612981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 57 - 260
Target Start/End: Original strand, 20542086 - 20542289
Alignment:
| Q |
57 |
tggtgaaaagatggatcaaactctggttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgat |
156 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
20542086 |
tggtgagaagatggatcaaacgctggttgttgaaaagattctgagatctttaacaagtaaattcaattatgtggtgtgttccattgaagaatcaaatgac |
20542185 |
T |
|
| Q |
157 |
gtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttga |
256 |
Q |
| |
|
|| || || || || ||| |||| || |||||||||||||||||||||||||||| |||||||||||| || ||||| |||| ||| |||||||||| |
|
|
| T |
20542186 |
gtcactacgctatcaattgatgagttgcagagtagtttacttgttcaagaacaacgcatgaaatctcagaatcaagactttgatgttgaacaagctttga |
20542285 |
T |
|
| Q |
257 |
aggt |
260 |
Q |
| |
|
|||| |
|
|
| T |
20542286 |
aggt |
20542289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 412
Target Start/End: Original strand, 20542372 - 20542419
Alignment:
| Q |
365 |
aagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaa |
412 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
20542372 |
aagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaa |
20542419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 257
Target Start/End: Complemental strand, 23940233 - 23940057
Alignment:
| Q |
80 |
tggttgttgaaaagatcttgagatctttaacaagcaagttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatga |
179 |
Q |
| |
|
|||| ||||| ||||| || ||||| ||| ||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || | ||||| |||| |
|
|
| T |
23940233 |
tggtggttgagaagattttaagatcatta-caagcaagttcaattgtgtggtgtgttccattgaagaatcaaatgatgtgactactttccccattgatga |
23940135 |
T |
|
| Q |
180 |
attacagagtagtttacttgttcaagaacaacacatgaaatctcaaaaccaagaaactgattctgagcaagctttgaa |
257 |
Q |
| |
|
||| || || | || ||||| || ||||| ||||||| ||||| || ||| |||||||| ||| ||||||||||| |
|
|
| T |
23940134 |
attgcaaagcaacttgcttgtgcaggaacattacatgaactctcataatcaataaactgatagtgaacaagctttgaa |
23940057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 29945214 - 29945122
Alignment:
| Q |
118 |
ttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaa |
210 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| |||||||| |||||||| |||||| |||| || || |||||| | |||||||| |||||| |
|
|
| T |
29945214 |
ttcaattatgttgtgtgctcaattgaagaatcaaatgatgttacaacactctccattgatgagttgcaaagtagtcttcttgttcatgaacaa |
29945122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 10784346 - 10784254
Alignment:
| Q |
118 |
ttcaattatgtggtgtgatctattgaagaatccaatgatgtgacaacactttccattaatgaattacagagtagtttacttgttcaagaacaa |
210 |
Q |
| |
|
||||||||||| || || || ||||||||||| |||||||| ||| ||||||||||| |||| || ||||||||| | |||||||| |||||| |
|
|
| T |
10784346 |
ttcaattatgttgtttgctcaattgaagaatcaaatgatgttacagcactttccattgatgagttgcagagtagtcttcttgttcatgaacaa |
10784254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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