View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10919_low_9 (Length: 403)
Name: NF10919_low_9
Description: NF10919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10919_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 15430316 - 15429946
Alignment:
| Q |
16 |
atcaaagatgaccctcataaactccgacttaaattctccctaaaaatctttgatgaagacaaaattgattccatcaaacccaagacttttaaaattttca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
15430316 |
atcaaagatgaccctcataaactccgacttaaattctccctaaaaatctttgacgaagacaaaattgattccataaggctcaagacttttaaaattttca |
15430217 |
T |
|
| Q |
116 |
caatcccacattgcgtgtttaacctcctcttcactaaccattctaaagagacctccactatcagtcatgttgagacactttaaa-tcaaatcatccaacc |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
15430216 |
caatcccacattgtgtgtttaacctcctcttcactaaccattctaaagagacctccactatcagtcatgttgagacactttaaaatcaaatcatccaaac |
15430117 |
T |
|
| Q |
215 |
aaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtattagcatcgccttaattaagccacttta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15430116 |
aaggtctctcgattctattttctttaaaataagttgcaaagtgatcatagatcgttgctctaactttttgtattagcatcgccttaattaagccacttta |
15430017 |
T |
|
| Q |
315 |
ctctagaattttaccactacaagttgttataaatgtttgataatatgaacaaattatatgaatgagtttac |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15430016 |
ctctagaattttaccactacaagttgttataaatgtttgataatatgaacaaattatatgaatgagtttac |
15429946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University