View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1091_high_2 (Length: 428)

Name: NF1091_high_2
Description: NF1091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1091_high_2
NF1091_high_2
[»] chr8 (5 HSPs)
chr8 (12-394)||(13274506-13274888)
chr8 (337-394)||(38061314-38061371)
chr8 (320-394)||(19385686-19385760)
chr8 (316-394)||(29275784-29275862)
chr8 (340-386)||(21241114-21241160)
[»] chr6 (4 HSPs)
chr6 (154-394)||(14923290-14923533)
chr6 (316-394)||(20758770-20758848)
chr6 (316-394)||(21182606-21182684)
chr6 (318-385)||(34237323-34237390)
[»] chr4 (7 HSPs)
chr4 (310-394)||(6686446-6686530)
chr4 (316-394)||(6683219-6683297)
chr4 (335-393)||(8532494-8532552)
chr4 (337-393)||(8532765-8532821)
chr4 (318-388)||(579945-580015)
chr4 (341-393)||(17538528-17538580)
chr4 (341-393)||(17539575-17539627)
[»] chr7 (5 HSPs)
chr7 (316-394)||(24509614-24509692)
chr7 (190-305)||(21817602-21817717)
chr7 (322-388)||(2432903-2432969)
chr7 (316-393)||(2435115-2435192)
chr7 (316-394)||(43697342-43697420)
[»] scaffold0211 (1 HSPs)
scaffold0211 (310-394)||(20855-20939)
[»] chr3 (3 HSPs)
chr3 (316-374)||(26362569-26362627)
chr3 (339-394)||(6240161-6240216)
chr3 (14-52)||(55454799-55454837)
[»] chr2 (4 HSPs)
chr2 (317-394)||(36050174-36050250)
chr2 (316-379)||(24412044-24412107)
chr2 (316-371)||(13437751-13437805)
chr2 (253-374)||(18337072-18337193)
[»] chr1 (3 HSPs)
chr1 (279-394)||(8753293-8753407)
chr1 (317-394)||(964614-964690)
chr1 (317-394)||(48713602-48713677)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 394
Target Start/End: Complemental strand, 13274888 - 13274506
Alignment:
Q  12 agagaggaagaaaggttcaatacaagttttatttagtatcttggggcaacatatcaattggcatatattgaagacatatatagaaaaactcctaattact 111  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13274888 agagagaaagaaaggttcgatacaagttttatttagtatcttggggcaacatatcaattggcatatattgaagacatatatagaaaaactcctaattact 13274789  T
Q  112 atttgctgattagtattgnnnnnnnnncaattagtattctcaccctcacgtattttccatagaaaaaattattcttactttcatgcttttagacatatac 211  Q
    ||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  13274788 atttgctgattagtattgaaaaaaaa-caattagtattctcaccctcacgtattttccatagaaaaaattatccttactttcatggttttagacatatac 13274690  T
Q  212 ataaacaatacaaaatcaattttcattaagctaatacacattttgggtttcatcttcctgaataatttatattcttgctagtttctgtatcctt-aataa 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||    
T  13274689 ataaacaatacaaaatcaattttcatcaagctaatacacattttgggtttcatcttcctgaagaaattatattcttgctagtttctgtatccttgaataa 13274590  T
Q  311 tattcagaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  13274589 tattcagaagggtatgttatatcctaggggattaacgtataattacgcggaaaatctttaaggacagtgcgatcagcacgtctc 13274506  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 337 - 394
Target Start/End: Original strand, 38061314 - 38061371
Alignment:
Q  337 ggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  38061314 ggggattagcgtataattacgcggaaaatccttaaggacagtttgatcagcacgtctc 38061371  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 394
Target Start/End: Complemental strand, 19385760 - 19385686
Alignment:
Q  320 gggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||||| ||| |||||| |||||||||||||||| | |||||| | |||||||||| ||||||||||||||    
T  19385760 gggtctgttaaatcttggggggttagcgtataattacgtgaaaaatcatgaaggatagtgcgatcagcacgtctc 19385686  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 29275784 - 29275862
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||| || |||| || || ||||||||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||    
T  29275784 agaaggatcggttaaattctaggggattagcgtataatcacgcggaaaatccttaaagatagtgcgattagcacgtctc 29275862  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 386
Target Start/End: Complemental strand, 21241160 - 21241114
Alignment:
Q  340 gattagcgtataattacgcggaaaatccttaaggatagtgtgatcag 386  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  21241160 gattagcgtataattatgcggaaaatccttaaggatattgtgatcag 21241114  T

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Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 154 - 394
Target Start/End: Original strand, 14923290 - 14923533
Alignment:
Q  154 ccctcacgtattttccatagaaaaaattattcttactttcatgcttttagacatatacataaa----caatacaaaatcaattttcattaagctaataca 249  Q
    ||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||| |    ||||||||||||||||||||| |||||||| ||    
T  14923290 ccctcacgtgttttccatagcaaaaaatattctcactttcatgcttttagacatatacatacataaccaatacaaaatcaattttcatcaagctaatgca 14923389  T
Q  250 cattttgggtttcatcttcctgaataatttatattcttgctagtttctgtatcctt-aataatattcagaagggtctgttatatcctgggggattagcgt 348  Q
    ||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||| | || |||  ||||| || ||||| ||| ||| || |||||||    
T  14923390 catcttgggtttcatcttcctgattaaattatattcttgctag-ttctgtatccttgattactatcaagaagagtatgttaaatcatggtgggttagcgt 14923488  T
Q  349 ataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    || | |||| |||||||| || |||| || | ||||||| ||||||    
T  14923489 atta-tacgtggaaaatctttgaggacagcgcgatcagcgcgtctc 14923533  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 20758848 - 20758770
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||||||||| ||| ||||||||||||||||||  ||| ||||||| |||||||| |||||||||||||||||||    
T  20758848 agaagggtctgttaaatcttgggggattagcgtataaacacgtggaaaattcttaaggacagtgtgatcagcacgtctc 20758770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 21182684 - 21182606
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||||||||| |||||| ||||||||||||||||||| || |||||| ||||||| | || ||||||||||||||    
T  21182684 agaagggtctgttaaatcctgagggattagcgtataattacacgaaaaatcattaaggacaatgcgatcagcacgtctc 21182606  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 34237390 - 34237323
Alignment:
Q  318 aagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatca 385  Q
    |||||||||||| ||||| ||  ||||| |||||||||||||||||||||||||||| |||| |||||    
T  34237390 aagggtctgttaaatcctaggaaattagtgtataattacgcggaaaatccttaaggacagtgcgatca 34237323  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 6686446 - 6686530
Alignment:
Q  310 atattcagaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  6686446 atattgagaatggtctgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagtgcgatcagcacgtctc 6686530  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 6683219 - 6683297
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||| |||||| | ||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  6683219 agaagagtctgtgaaatcctggaggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtctc 6683297  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 8532552 - 8532494
Alignment:
Q  335 tgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtct 393  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||    
T  8532552 tgggggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtct 8532494  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 8532821 - 8532765
Alignment:
Q  337 ggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtct 393  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  8532821 ggggattagcgtataattacgcgaaaaatcattaaggacagtgtgatcagcacgtct 8532765  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 388
Target Start/End: Complemental strand, 580015 - 579945
Alignment:
Q  318 aagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagca 388  Q
    ||||||| |||| || ||||||||||| ||||||||||||||||||||||||||| | |||| ||||||||    
T  580015 aagggtccgttaaattctgggggattaacgtataattacgcggaaaatccttaagaacagtgcgatcagca 579945  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 17538528 - 17538580
Alignment:
Q  341 attagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtct 393  Q
    ||||||||||||||||||||||||| |||||| | |||| |||||||||||||    
T  17538528 attagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtct 17538580  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 17539575 - 17539627
Alignment:
Q  341 attagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtct 393  Q
    ||||||||||||||||||||||||| |||||| | |||| |||||||||||||    
T  17539575 attagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtct 17539627  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 316 - 394
Target Start/End: Complemental strand, 24509692 - 24509614
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||||    
T  24509692 agaagggtttgttaaatcctgggcgattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtctc 24509614  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 305
Target Start/End: Original strand, 21817602 - 21817717
Alignment:
Q  190 tttcatgcttttagacatatacataaacaatacaaaatcaattttcattaagctaatacacattttgggtttcatcttcctgaataatttatattcttgc 289  Q
    ||||||||||| ||||||||||| || ||||  |||||| |||||||| ||| | |||||||| |||| |||||||| | ||| ||| |||||||||| |    
T  21817602 tttcatgctttgagacatatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttggatttcatctccttgattaaattatattctttc 21817701  T
Q  290 tagtttctgtatcctt 305  Q
    |||||| |||||||||    
T  21817702 tagtttatgtatcctt 21817717  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 322 - 388
Target Start/End: Original strand, 2432903 - 2432969
Alignment:
Q  322 gtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagca 388  Q
    |||||||| ||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  2432903 gtctgttaaatcttggaggattagcgtataattacgtggaaaatccttaaggacagtgtgatcagca 2432969  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 316 - 393
Target Start/End: Original strand, 2435115 - 2435192
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtct 393  Q
    |||||||| ||||| ||| |||||||||| |||||||||||||| |||||||||||| | |||| |||||||||||||    
T  2435115 agaagggtatgttaaatcttgggggattaacgtataattacgcgaaaaatccttaagaaaagtgcgatcagcacgtct 2435192  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 394
Target Start/End: Original strand, 43697342 - 43697420
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    |||||||| ||||| |||||||| | ||||| |||||||||| | |||||||||||||| |  | ||||||||||||||    
T  43697342 agaagggtttgttaaatcctgggcggttagcatataattacgtgaaaaatccttaaggacaacgcgatcagcacgtctc 43697420  T

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Target: scaffold0211 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 20939 - 20855
Alignment:
Q  310 atattcagaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||| |||||||||||||| ||||||| |||||||| ||||||||||| ||||||  |||||||||||| ||||| ||||||||    
T  20939 atattaagaagggtctgttaaatcctggaggattagcatataattacgcagaaaatttttaaggatagtgcgatcaacacgtctc 20855  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 26362569 - 26362627
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaagga 374  Q
    |||||||||||||| ||| || |||||||||||||||||| ||| ||||||||||||||    
T  26362569 agaagggtctgttaaatcatgagggattagcgtataattatgcgaaaaatccttaagga 26362627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 6240216 - 6240161
Alignment:
Q  339 ggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||||| ||||||||| ||||||||||||||| || ||||||||||||| |||||    
T  6240216 ggattagagtataattaagcggaaaatccttaaagacagtgtgatcagcatgtctc 6240161  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 55454837 - 55454799
Alignment:
Q  14 agaggaagaaaggttcaatacaagttttatttagtatct 52  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  55454837 agaggaagaaaggttcgatacaaattttatttagtatct 55454799  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 36050174 - 36050250
Alignment:
Q  317 gaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||||||||||| || ||||||  |||||||||||||||||  ||||| |||||||| |||| ||||||||||||||    
T  36050174 gaagggtctgttaaattctggggt-ttagcgtataattacgcaaaaaattcttaaggacagtgcgatcagcacgtctc 36050250  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 24412107 - 24412044
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtg 379  Q
    |||||||||||||||||  ||||||||||| | ||||||||||| ||||||| |||||| ||||    
T  24412107 agaagggtctgttatattttgggggattagagcataattacgcgtaaaatccataaggacagtg 24412044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 13437805 - 13437751
Alignment:
Q  316 agaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaa 371  Q
    |||| ||||||||| |||||| || ||||||||||||||||| |||||||||||||    
T  13437805 agaatggtctgttaaatcctgagg-attagcgtataattacgtggaaaatccttaa 13437751  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 374
Target Start/End: Original strand, 18337072 - 18337193
Alignment:
Q  253 tttgggtttcatcttcctgaataatttatattcttgctagtttctgtatcctt-aataatattcagaagggtctgttatatcctgggggattagcgtata 351  Q
    ||||| ||||||||||| || ||| |||||||||||||||||| || |||||| | ||  ||  ||||| |||||||| || || |||| |||||||||     
T  18337072 tttggatttcatcttccagattaaattatattcttgctagtttatgcatccttgattaccatcaagaagagtctgttaaattcttgggggttagcgtatt 18337171  T
Q  352 attacgcggaaaatccttaagga 374  Q
    | |||||||||||| ||| ||||    
T  18337172 a-tacgcggaaaattcttgagga 18337193  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 394
Target Start/End: Complemental strand, 8753407 - 8753293
Alignment:
Q  279 tatattcttgctagtttctgtatccttaataatat-tcagaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatag 377  Q
    |||||||||||||||| ||| |||||| ||  ||| ||| || ||||||||| ||| || || ||||  ||||||||||||||||||| ||||| || ||    
T  8753407 tatattcttgctagtt-ctgcatccttgattttatatcaaaaaggtctgttaaatcttgagg-attaatgtataattacgcggaaaattcttaaagacag 8753310  T
Q  378 tgtgatcagcacgtctc 394  Q
    |||||||||| ||||||    
T  8753309 tgtgatcagctcgtctc 8753293  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 964614 - 964690
Alignment:
Q  317 gaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||| ||| ||| ||||||| || |||||||||| ||| || ||||||||||||||| |||| ||| ||||||||||    
T  964614 gaaggatctattaaatcctggagg-ttagcgtatatttatgcagaaaatccttaaggacagtgcgataagcacgtctc 964690  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 394
Target Start/End: Complemental strand, 48713677 - 48713602
Alignment:
Q  317 gaagggtctgttatatcctgggggattagcgtataattacgcggaaaatccttaaggatagtgtgatcagcacgtctc 394  Q
    ||||||||||||| |||||||||  |||||||||||| |||  |||||||||||| || |||| ||||| ||||||||    
T  48713677 gaagggtctgttaaatcctggggt-ttagcgtataatcacgtagaaaatccttaa-gacagtgcgatcaacacgtctc 48713602  T

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