View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1091_low_1 (Length: 507)

Name: NF1091_low_1
Description: NF1091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1091_low_1
NF1091_low_1
[»] chr3 (7 HSPs)
chr3 (46-507)||(16898417-16898890)
chr3 (217-318)||(21477741-21477841)
chr3 (217-317)||(12215499-12215597)
chr3 (217-310)||(7937443-7937535)
chr3 (217-282)||(29685640-29685704)
chr3 (217-310)||(30045230-30045322)
chr3 (217-285)||(10773247-10773314)
[»] chr5 (7 HSPs)
chr5 (217-407)||(1585346-1585547)
chr5 (217-318)||(17945875-17945975)
chr5 (217-407)||(15504772-15504973)
chr5 (217-318)||(17696034-17696134)
chr5 (217-264)||(26397286-26397332)
chr5 (359-407)||(17696187-17696235)
chr5 (359-407)||(17946029-17946077)
[»] chr7 (17 HSPs)
chr7 (217-318)||(3091961-3092061)
chr7 (217-318)||(20398842-20398942)
chr7 (217-317)||(32215580-32215679)
chr7 (217-315)||(21120565-21120662)
chr7 (251-314)||(29352705-29352768)
chr7 (334-399)||(27257430-27257495)
chr7 (226-314)||(43656106-43656193)
chr7 (279-400)||(27267555-27267692)
chr7 (226-309)||(38651280-38651363)
chr7 (217-264)||(22681441-22681487)
chr7 (279-318)||(27257525-27257564)
chr7 (225-310)||(42453622-42453708)
chr7 (250-315)||(27294233-27294298)
chr7 (234-310)||(13427965-13428041)
chr7 (363-407)||(27294121-27294165)
chr7 (319-395)||(32215694-32215769)
chr7 (234-290)||(38889930-38889986)
[»] scaffold0267 (1 HSPs)
scaffold0267 (217-318)||(10960-11060)
[»] chr8 (6 HSPs)
chr8 (232-318)||(39143290-39143376)
chr8 (226-319)||(9018038-9018136)
chr8 (217-316)||(21313772-21313872)
chr8 (279-315)||(8304671-8304707)
chr8 (226-309)||(15172800-15172884)
chr8 (363-407)||(21313671-21313715)
[»] chr1 (4 HSPs)
chr1 (217-407)||(16423196-16423397)
chr1 (217-264)||(24509317-24509363)
chr1 (217-310)||(10349521-10349614)
chr1 (217-286)||(7637638-7637706)
[»] chr4 (7 HSPs)
chr4 (217-317)||(17712673-17712772)
chr4 (226-305)||(52762919-52762998)
chr4 (226-317)||(13317648-13317739)
chr4 (217-310)||(28709150-28709242)
chr4 (359-407)||(17712830-17712878)
chr4 (217-310)||(26893331-26893423)
chr4 (217-261)||(17186304-17186347)
[»] chr6 (3 HSPs)
chr6 (226-318)||(2854120-2854212)
chr6 (352-405)||(12607396-12607449)
chr6 (359-407)||(2854268-2854316)
[»] scaffold0116 (1 HSPs)
scaffold0116 (237-318)||(42208-42289)
[»] chr2 (5 HSPs)
chr2 (234-315)||(10005227-10005308)
chr2 (217-312)||(39994655-39994749)
chr2 (234-316)||(33006705-33006787)
chr2 (225-310)||(17607636-17607722)
chr2 (378-406)||(33006861-33006889)
[»] scaffold0423 (1 HSPs)
scaffold0423 (217-316)||(10015-10114)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 46 - 507
Target Start/End: Complemental strand, 16898890 - 16898417
Alignment:
Q  46 aggccatcctttccaataatttgccagctcttgttgtcgagaagtnnnnnnn-caacatttaatatgaaaatttggaacgtatggaaaagcagattttca 144  Q
    ||||||||||||||||||||||||||||| || ||||||||||||        |||||||||||||||||||||||||||||| ||||||||||||||||    
T  16898890 aggccatcctttccaataatttgccagcttttattgtcgagaagtaaagaaaacaacatttaatatgaaaatttggaacgtatagaaaagcagattttca 16898791  T
Q  145 agaattatagaagggctcaaatagttaatagataccttgtcatatccaacaagagacataaacnnnnnnnnnaacaaatcaaaaatgggatatattgctc 244  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||         |||||||||||| || ||||||||||||    
T  16898790 agaattatagaagggctcaaaaagttaacagataccttgtcatatccaacaagaaacataaactttttttttaacaaatcaaaa-tgagatatattgctc 16898692  T
Q  245 aaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccacaa------------atgtcaccacctga 332  Q
    ||||||| |||||||||| | | |||| ||||  ||||||||||||||||||||||| ||||||||||||||||            ||| ||| ||||||    
T  16898691 aaaagcaaagtgattcactccgcacaaaatgtgctaaagtgatgaatcatctaatatatgttacaacaccacaacacctaataaagatgccactacctga 16898592  T
Q  333 ccataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaagtaaaaaacataaacttgtttgcaac 432  Q
     ||||||| |||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||| || ||| ||||| |||||||||||    
T  16898591 acataaagtaccaaacaaattacatgacatccatacaataaagggcatgtctccatcaatcgtgaaaaccaaaagcaagaaatataaatttgtttgcaac 16898492  T
Q  433 acttaatatgagatagtgagactaagattcatctactagaactaaaaatatttgcaatacacttttaaatatttc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16898491 acttaatatgagatagtgagactaagattcatctactagaactaaaaatatttgtaatacacttttaaatatttc 16898417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 21477741 - 21477841
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| ||||||  ||||||||||||||| | ||||| |||  |||| ||||||||| |||||||||||||||||||||||    
T  21477741 aacaaatcaaaa-tggaatatattactcaaagacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccac 21477839  T
Q  317 aa 318  Q
    ||    
T  21477840 aa 21477841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 12215597 - 12215499
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||  ||| ||||||| ||||||| ||||||||||||||| | ||||| |||  |||| ||||||||| |||||||| ||||||||||||||    
T  12215597 aacaaatcaaag-tggaatatattactcaaaa-cagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacaccac 12215500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 7937535 - 7937443
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||| ||| || ||||||||||| |||||||||||| ||||| ||||| |||  ||||||||||||||| | ||  ||||||||||    
T  7937535 aacaaatcaaaa-tggaatctattgctcaaaggcagagtgattccccctgcacaaggtgtgctaaagtgatgaatcacccaaagtctgttacaa 7937443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 29685704 - 29685640
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaa 282  Q
    |||||||||||| | | |||||||||||||||  | |||||||||||||| |||||||||| ||||    
T  29685704 aacaaatcaaaa-tagaatatattgctcaaaataatagtgattcaccctgcacaagatgtactaaa 29685640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 30045322 - 30045230
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||| |||||||||||||||||||| |  |||| |||||||| ||||| |||   ||||||| ||| || ||||  ||||||||||    
T  30045322 aacaaatcaaaa-tgggatatattgctcaaaagaaaggtgaatcaccctgcacaaggtgtgcaaaagtgaagaaacacctaaagtctgttacaa 30045230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 10773314 - 10773247
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtg 285  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||||| | ||||| |||  |||||||    
T  10773314 aacaaatcaaaa-tgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtg 10773247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 1585547 - 1585346
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||| |||  |||||||||||||| |||||||| ||||||||||||||    
T  1585547 aacaaatcaaaattga-atatattgctcaaaagcagagtgattcaccccgtacaaggtgtgctaaagtgatgaatcctctaatatatgttacaacaccac 1585449  T
Q  317 aa------------atgtcaccacctgaccataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgtgaaaaccaa 404  Q
    |             ||| |||||||| | |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  1585448 atcacctaataaagatgccaccacctaaacataaagcaccaaacaaattacatgacacccatacaataaaggggatgtctccaccaatcgtgaaaaccaa 1585349  T
Q  405 aag 407  Q
    |||    
T  1585348 aag 1585346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 17945875 - 17945975
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||| | ||||| |||  |||| ||||||||| |||||||||||||||||||||||    
T  17945875 aacaaatcaaaa-tggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatatctgttacaacaccac 17945973  T
Q  317 aa 318  Q
    ||    
T  17945974 aa 17945975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 407
Target Start/End: Complemental strand, 15504973 - 15504772
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| || ||||  |||||||||||||| | ||||| ||| ||||| ||||||||| ||||||||||||||||| |||||    
T  15504973 aacaaatcaaaa-tggaatatattacttaaaaatagagtgattcaccccgcacaaggtgtgttaaaatgatgaatcttctaatatctgttacaataccac 15504875  T
Q  317 aa-------------atgtcaccacctgaccataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgtgaaaacca 403  Q
    ||             ||| |||||||| | || ||||  |||||| | ||| || ||| |||||||||||||| |||||||||||||||||| |||||||    
T  15504874 aacatctaaaaaaagatgccaccacctaaacaaaaaggtccaaac-acttaaatcacaaccatacaataaaggggatgtctccaccaatcgtaaaaacca 15504776  T
Q  404 aaag 407  Q
    ||||    
T  15504775 aaag 15504772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 17696034 - 17696134
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| | | ||||||| ||||||| |||||||||||| || | ||||| |||  |||| ||||||||  |||||||||||||||||||||||    
T  17696034 aacaaatcaaaa-tagaatatattactcaaaaacagagtgattcatcccgcacaaggtgtgctaaaatgatgaattctctaatatctgttacaacaccac 17696132  T
Q  317 aa 318  Q
    ||    
T  17696133 aa 17696134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 26397286 - 26397332
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccc 264  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  26397286 aacaaatcaaaa-tggaatatattgctcaaaagaagagtgattcaccc 26397332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 17696187 - 17696235
Alignment:
Q  359 acatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    ||| |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  17696187 acacccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaag 17696235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 17946029 - 17946077
Alignment:
Q  359 acatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    ||| |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  17946029 acacccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaag 17946077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 3092061 - 3091961
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||||| | ||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  3092061 aacaaatcaaaa-taggatatattgctcaaaagcaaagtgattcaccctgcataaggtgtactaaagtgatgaatcacctaatatctgttacaacaccac 3091963  T
Q  317 aa 318  Q
    ||    
T  3091962 aa 3091961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 20398942 - 20398842
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||  ||||||||||||||||||||||||||||||| |||||| ||||  ||||||| ||||||||||||||| ||||||||||||||    
T  20398942 aacaaatcaaaa-tgaaatatattgctcaaaagcagagtgattcaccccgtacaaaatgtgctaaagtggtgaatcatctaatatttgttacaacaccac 20398844  T
Q  317 aa 318  Q
    ||    
T  20398843 aa 20398842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 32215580 - 32215679
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||||||||| | ||||| |||  |||||||||||||| |||||||||||||||||||||||    
T  32215580 aacaaatcaaaa-tggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccac 32215678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 21120662 - 21120565
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacca 315  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||| || | ||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  21120662 aacaaatcaaaa-tggaatatattgctcaaaagcagtgtgattcatcccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacca 21120565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 29352768 - 29352705
Alignment:
Q  251 agagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacc 314  Q
    ||||||||||| |||| |||||||||  |||||||||||||| |||||||||||||||||||||    
T  29352768 agagtgattcatcctgcacaagatgtgctaaagtgatgaatcctctaatatctgttacaacacc 29352705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 399
Target Start/End: Complemental strand, 27257495 - 27257430
Alignment:
Q  334 cataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgtgaaa 399  Q
    ||||||||||||||||||||||||  || |||||||||||||  ||||||||||| ||||||||||    
T  27257495 cataaagcaccaaacaaattacatgtcacccatacaataaagaggatgtctccacaaatcgtgaaa 27257430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 43656193 - 43656106
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacc 314  Q
    ||||||| ||||||| |||||||| | ||||||||| || | ||||| |||  |||||||||||||||||||||||||| |||||||||    
T  43656193 aaaatggaatatattactcaaaagta-agtgattcatcccgcacaaggtgtgctaaagtgatgaatcatctaatatctgatacaacacc 43656106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 279 - 400
Target Start/End: Complemental strand, 27267692 - 27267555
Alignment:
Q  279 taaagtgatgaatcatctaatatctgttacaacaccacaa------------atgtcaccacctgaccataaagcaccaaacaaatta----cattacat 362  Q
    |||||||||||||| |||||||||||||||||||||||||            ||| |||||||| | |||||||||||||||||||||    |||  ||     
T  27267692 taaagtgatgaatcctctaatatctgttacaacaccacaacacctaacaaagatgccaccacctaaacataaagcaccaaacaaattacatgcatgtcac 27267593  T
Q  363 ccatacaataaaggagatgtctccaccaatcgtgaaaa 400  Q
    |||||||||||||  ||||||||||| |||||||||||    
T  27267592 ccatacaataaagaggatgtctccacaaatcgtgaaaa 27267555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 38651363 - 38651280
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttaca 309  Q
    ||||||| |||||||| ||||||||| |||||||||||| | | ||| | |  ||||||||||||||| ||||| |||||||||    
T  38651363 aaaatggaatatattgttcaaaagcatagtgattcaccccgcataaggtatgctaaagtgatgaatcacctaatgtctgttaca 38651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 22681441 - 22681487
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccc 264  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  22681441 aacaaatcaaaa-tggaatatattgctcaaaagaagagtgattcaccc 22681487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 27257564 - 27257525
Alignment:
Q  279 taaagtgatgaatcatctaatatctgttacaacaccacaa 318  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  27257564 taaagtgatgaatcctctagtatctgttacaacaccacaa 27257525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 42453708 - 42453622
Alignment:
Q  225 aaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgt-attaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||| |||||||||||||| | | |||||||||||| | | ||| |||  | |||||||||||||||  ||||||||||||||    
T  42453708 aaaaatggaatatattgctcaaacgaacagtgattcaccccgcataaggtgtgctaaaagtgatgaatcatacaatatctgttacaa 42453622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 27294298 - 27294233
Alignment:
Q  250 cagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacca 315  Q
    |||||||||||||||   ||||| |||  |||| ||||||||| |||||||| |||||||||||||    
T  27294298 cagagtgattcaccccacacaaggtgtgctaaaatgatgaatcctctaatatttgttacaacacca 27294233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 13427965 - 13428041
Alignment:
Q  234 atatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||||||| |  |||||||||||   ||||| ||| |||||||||||||||| | ||  ||||||||||    
T  13427965 atatattgctcaaaagaaaggtgattcaccccacacaaggtgtgttaaagtgatgaatcacccaacgtctgttacaa 13428041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 27294165 - 27294121
Alignment:
Q  363 ccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  27294165 ccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaag 27294121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 395
Target Start/End: Original strand, 32215694 - 32215769
Alignment:
Q  319 atgtcaccacctgaccataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgt 395  Q
    ||| |||||||| | || |||| ||||||||  ||| || ||| |||||||||||||| ||||||||||||||||||    
T  32215694 atgccaccacctaaacaaaaaggaccaaacac-ttaaatcacacccatacaataaaggggatgtctccaccaatcgt 32215769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 38889986 - 38889930
Alignment:
Q  234 atatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaa 290  Q
    |||||||||||||||| |  ||||||||||| | ||||| |||| ||||||||||||    
T  38889986 atatattgctcaaaagaaaggtgattcaccccgcacaaggtgtactaaagtgatgaa 38889930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 11060 - 10960
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| |||||||  |||||||||||||| | ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  11060 aacaaatcaaaa-tggaatatattactcaaaaagagagtgattcaccccgcacaaggtgtgttaaagtgatgaatcctctaatatctgttacaacaccac 10962  T
Q  317 aa 318  Q
    ||    
T  10961 aa 10960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 318
Target Start/End: Complemental strand, 39143376 - 39143290
Alignment:
Q  232 ggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccacaa 318  Q
    |||||||||||||||||||| |||||||||||| | ||||| |||  ||||||||||||||| |||||||||||||||| |||||||    
T  39143376 ggatatattgctcaaaagcaaagtgattcaccccgcacaaggtgtggtaaagtgatgaatcacctaatatctgttacaataccacaa 39143290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 226 - 319
Target Start/End: Complemental strand, 9018136 - 9018038
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattca-----ccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccacaaa 319  Q
    ||||||| |||||||||||||||||| |||||||||     ||  | | ||| |||  ||||||||||||||| |||||||||||||||||||||||||    
T  9018136 aaaatggaatatattgctcaaaagcaaagtgattcaattcacctcgcataaggtgtgctaaagtgatgaatcacctaatatctgttacaacaccacaaa 9018038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 21313872 - 21313772
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaag--cagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacc 314  Q
    |||||||||||| ||| ||||||| |||||||   |||| |||||||||| ||||||| |||  |||| ||||||||||||||  |||||||||||||||    
T  21313872 aacaaatcaaaa-tggaatatattactcaaaaaaacagaatgattcaccccgtacaaggtgtgctaaaatgatgaatcatctagaatctgttacaacacc 21313774  T
Q  315 ac 316  Q
    ||    
T  21313773 ac 21313772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 8304671 - 8304707
Alignment:
Q  279 taaagtgatgaatcatctaatatctgttacaacacca 315  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8304671 taaagtgatgaatcctctaatatctgttacaacacca 8304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 15172884 - 15172800
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgt-attaaagtgatgaatcatctaatatctgttaca 309  Q
    ||||||| ||||||| |||||| | |||||||||||||| | |||| ||||  | ||||||||||||||  ||||||||||||||    
T  15172884 aaaatggaatatatttctcaaacgaagagtgattcaccccgaacaatatgtgctaaaagtgatgaatcacataatatctgttaca 15172800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 407
Target Start/End: Complemental strand, 21313715 - 21313671
Alignment:
Q  363 ccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  21313715 ccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaag 21313671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 217 - 407
Target Start/End: Original strand, 16423196 - 16423397
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| | ||||||||||||||||| || || ||||||||| | ||||| ||| ||||| ||||||| ||  |||||||||||||||||||||    
T  16423196 aacaaatcaaaa-taggatatattgctcaaaatcaaagcgattcaccccgcacaaggtgttttaaactgatgaaacacgtaatatctgttacaacaccac 16423294  T
Q  317 ------------aaatgtcaccacctgaccataaagcaccaaacaaattacattacatccatacaataaaggagatgtctccaccaatcgtgaaaaccaa 404  Q
                | ||| |||| ||| |  ||||||||||||||||||||||| ||| |||||||| ||||  |||||||||||| |||||||||| |||    
T  16423295 atcacctaataaagatgccaccgcctaaaaataaagcaccaaacaaattacatgacacccatacaaaaaagtggatgtctccaccgatcgtgaaaatcaa 16423394  T
Q  405 aag 407  Q
    |||    
T  16423395 aag 16423397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 24509317 - 24509363
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccc 264  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||    
T  24509317 aacaaatcaaaa-tggaatatattgctcaaaagaagagtgattcaccc 24509363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 10349614 - 10349521
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgt-attaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||| ||| ||||||||||||||   | |||||||||||||| ||||| |||  | ||||||||||||||   ||||||||||||||    
T  10349614 aacaaatcaaaa-tggaatatattgctcaaactgaaagtgattcaccctgcacaaggtgtgctaaaagtgatgaatcacaaaatatctgttacaa 10349521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 7637638 - 7637706
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtga 286  Q
    |||||||||||| |||||||||||||||||||| |  ||||||||||| | ||||| |||  ||||||||    
T  7637638 aacaaatcaaaa-tgggatatattgctcaaaagaaaggtgattcaccccgcacaaggtgtgctaaagtga 7637706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 17712673 - 17712772
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    |||||||||||| ||| ||||||| |||| || ||||||||||||||| | ||||| |||  |||||||||||||| |||||||||||||||||||||||    
T  17712673 aacaaatcaaaa-tggaatatattactcagaaacagagtgattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacaccac 17712771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 52762998 - 52762919
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgt 305  Q
    ||||||| |||||||||||||||| | |||||||||||  ||||||| ||| |||||||||||||||| ||||| |||||    
T  52762998 aaaatggaatatattgctcaaaagtatagtgattcacctcgtacaaggtgtgttaaagtgatgaatcacctaatgtctgt 52762919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 13317648 - 13317739
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccaca 317  Q
    ||||||| ||||||| ||||| | |||||||||||||||   ||||| ||| ||||| ||||||||   |||||||||||||||||||||||    
T  13317648 aaaatggaatatattactcaagaacagagtgattcaccccacacaaggtgtgttaaaatgatgaattcgctaatatctgttacaacaccaca 13317739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 28709242 - 28709150
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||| ||  ||||||| ||||||||  || |||||||||| | |||||||||  ||| ||||||||||||| |||||||| |||||    
T  28709242 aacaaatcaaaa-tgaaatatattactcaaaagaggaatgattcaccccgcacaagatgtgctaacgtgatgaatcatccaatatctgatacaa 28709150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 17712830 - 17712878
Alignment:
Q  359 acatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    ||| |||||||||||||| |||||||||||||||||| ||| |||||||    
T  17712830 acacccatacaataaaggggatgtctccaccaatcgtaaaagccaaaag 17712878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 26893423 - 26893331
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||||||| ||| || ||||||||||||| |  || |||||||||| ||||| |||  ||||||||||||||| | || |||| ||||||    
T  26893423 aacaaatcaaaa-tggaatgtattgctcaaaagaaaggtaattcaccctgcacaaggtgtgctaaagtgatgaatcacccaacatctattacaa 26893331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 17186347 - 17186304
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattca 261  Q
    |||||||||||| ||| |||||||||||||||| |||||||||||    
T  17186347 aacaaatcaaaa-tggaatatattgctcaaaagaagagtgattca 17186304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 226 - 318
Target Start/End: Original strand, 2854120 - 2854212
Alignment:
Q  226 aaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccacaa 318  Q
    ||||||| ||||||| ||||||| ||||||||||||||| | ||||| |||  |||| ||||||||| ||||||| |||||||||||||||||    
T  2854120 aaaatggaatatattactcaaaaacagagtgattcaccccgcacaaggtgtgctaaaatgatgaatcctctaatacctgttacaacaccacaa 2854212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 12607396 - 12607449
Alignment:
Q  352 ttacattacatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaa 405  Q
    |||||| |||||||||||| | || |||| |||||||||||| |||||||||||    
T  12607396 ttacatgacatccatacaaaagagtagatatctccaccaatcatgaaaaccaaa 12607449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 2854268 - 2854316
Alignment:
Q  359 acatccatacaataaaggagatgtctccaccaatcgtgaaaaccaaaag 407  Q
    ||| |||||||| ||||| |||||||||||||||||| ||| |||||||    
T  2854268 acacccatacaaaaaaggggatgtctccaccaatcgtaaaagccaaaag 2854316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 42208 - 42289
Alignment:
Q  237 tattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccacaa 318  Q
    |||| ||||||| || |||||||||||| | |||||||||  |||| ||||||||| |||||||||||||||||||||||||    
T  42208 tattactcaaaaacaaagtgattcaccccgcacaagatgtgctaaaatgatgaatcctctaatatctgttacaacaccacaa 42289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 315
Target Start/End: Complemental strand, 10005308 - 10005227
Alignment:
Q  234 atatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacca 315  Q
    |||||||| ||||| ||||||| |||||||| | ||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  10005308 atatattgttcaaaggcagagttattcaccccgcacaaggtgtgctaaagtgatgaatcctctaatatctgttacaacacca 10005227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 312
Target Start/End: Complemental strand, 39994749 - 39994655
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaaca 312  Q
    |||||||||||| ||| ||||||| |||||||  | |||||||||||| ||||||| |||  |||| ||||||||| |||||||||||||||||||    
T  39994749 aacaaatcaaaa-tggaatatattactcaaaaatatagtgattcaccccgtacaaggtgtgctaaaatgatgaatcctctaatatctgttacaaca 39994655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 33006705 - 33006787
Alignment:
Q  234 atatattgctcaaaagcagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacaccac 316  Q
    ||||||| |||||||| | |||||||||||  ||||||| |||  ||||||||||||||| ||||||||| ||||||||||||    
T  33006705 atatattactcaaaagtaaagtgattcacctcgtacaaggtgtcctaaagtgatgaatcacctaatatctcttacaacaccac 33006787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 17607722 - 17607636
Alignment:
Q  225 aaaaatgggatatattgctcaaaagcagagtgattcaccctgtacaagatgtatt-aaagtgatgaatcatctaatatctgttacaa 310  Q
    |||||||| |||||||||||||| | | |||||||||||  | ||||| ||| || ||||||||||||||   ||||||||||||||    
T  17607722 aaaaatggaatatattgctcaaacggacagtgattcacctcgcacaaggtgtgttaaaagtgatgaatcacacaatatctgttacaa 17607636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 406
Target Start/End: Original strand, 33006861 - 33006889
Alignment:
Q  378 gatgtctccaccaatcgtgaaaaccaaaa 406  Q
    |||||||||||||||||||||||||||||    
T  33006861 gatgtctccaccaatcgtgaaaaccaaaa 33006889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0423 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 10015 - 10114
Alignment:
Q  217 aacaaatcaaaaatgggatatattgctcaaaag-cagagtgattcaccctgtacaagatgtattaaagtgatgaatcatctaatatctgttacaacacca 315  Q
    |||||||||||| ||| ||||||| |||||||  |||| |||||||||| | ||||| |||  |||| ||||||||||||||  | ||||||||||||||    
T  10015 aacaaatcaaaa-tggaatatattactcaaaaaacagaatgattcaccccgcacaaggtgtgctaaaatgatgaatcatctagaaactgttacaacacca 10113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University