View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1091_low_3 (Length: 236)

Name: NF1091_low_3
Description: NF1091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1091_low_3
NF1091_low_3
[»] chr8 (5 HSPs)
chr8 (46-192)||(38613611-38613757)
chr8 (189-236)||(6311097-6311144)
chr8 (192-226)||(18870815-18870849)
chr8 (192-226)||(30655448-30655482)
chr8 (192-226)||(36979184-36979218)
[»] chr7 (2 HSPs)
chr7 (190-226)||(2057763-2057799)
chr7 (192-226)||(20357803-20357837)
[»] chr3 (1 HSPs)
chr3 (190-226)||(7167049-7167085)
[»] chr2 (1 HSPs)
chr2 (190-226)||(11099183-11099219)
[»] chr5 (4 HSPs)
chr5 (191-236)||(1457400-1457446)
chr5 (192-236)||(27444771-27444816)
chr5 (192-236)||(27449615-27449660)
chr5 (192-225)||(31180079-31180112)
[»] chr4 (3 HSPs)
chr4 (192-226)||(24741748-24741782)
chr4 (192-226)||(29760449-29760483)
chr4 (191-236)||(51520257-51520303)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 192
Target Start/End: Original strand, 38613611 - 38613757
Alignment:
Q  46 catcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 145  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613611 catcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgtaatctccgttttcacctgcagggtcttaaatacat 38613710  T
Q  146 tgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 192  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613711 tgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 6311097 - 6311144
Alignment:
Q  189 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatga 236  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatga 6311144  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 18870849 - 18870815
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatgaaa 18870815  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 30655448 - 30655482
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  30655448 tgttgtgaatccggttgaaactcacaccaatgaaa 30655482  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 36979184 - 36979218
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaaa 36979218  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 2057763 - 2057799
Alignment:
Q  190 tctgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||||| ||||||||||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaaa 2057799  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Complemental strand, 20357837 - 20357803
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  20357837 tgttgtgaatccggttgaaactcacaccaatgaaa 20357803  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 7167049 - 7167085
Alignment:
Q  190 tctgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||||| ||||||||||||||||||||||||||    
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaaa 7167085  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 11099219 - 11099183
Alignment:
Q  190 tctgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||||| ||||||||||||||||||||||||||    
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaaa 11099183  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 1457446 - 1457400
Alignment:
Q  191 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatga 236  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatga 1457400  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 27444771 - 27444816
Alignment:
Q  192 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatga 236  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatga 27444816  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 27449615 - 27449660
Alignment:
Q  192 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatga 236  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatga 27449660  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 31180079 - 31180112
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaa 225  Q
    |||||||| |||||||||||||||||||||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa 31180112  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 24741748 - 24741782
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  24741748 tgttgtgaatccggttgaaactcacaccaatgaaa 24741782  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 226
Target Start/End: Original strand, 29760449 - 29760483
Alignment:
Q  192 tgttgtgattccggttgaaactcacaccaatgaaa 226  Q
    |||||||| ||||||||||||||||||||||||||    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaaa 29760483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 51520257 - 51520303
Alignment:
Q  191 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatga 236  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatga 51520303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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