View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1091_low_4 (Length: 228)
Name: NF1091_low_4
Description: NF1091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1091_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 40553714 - 40553507
Alignment:
| Q |
1 |
ctcaactcttgaatgagagttttcacggaaattcaatcgtgaagatgttttcccaggtgatgaaagtgacttatggcaaaatagacaccttcctcaatta |
100 |
Q |
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| T |
40553714 |
ctcaactcttgaatgagagttttcacggaaattcaatcgtgaagatgttttcccaggtgatgaaagtgacttatggcaaaatagacaccttcctcaataa |
40553615 |
T |
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| Q |
101 |
acaactttatgaacttgtctg---aaaacttctgaaggattaactcaacaatctgtaaggctaatattaacacatgattatcctttcgagtgaatactct |
197 |
Q |
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| T |
40553614 |
acaactttatgaacttgtctgaaaaaaacttctgaaggattaactcaacaatctgtaaggctaatattaacacatgattatcctttcgagtgaatactct |
40553515 |
T |
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| Q |
198 |
gtccaaac |
205 |
Q |
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|||||||| |
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| T |
40553514 |
gtccaaac |
40553507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 28777312 - 28777387
Alignment:
| Q |
121 |
gaaaacttctgaaggattaactcaacaatctgtaaggctaatattaacacatgattatcctttcgagtgaatactc |
196 |
Q |
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| T |
28777312 |
gaaaaattttgaaggattatctcagcaatctgtaaggctaacattatcatatgatgatccttccgagtgaaaactc |
28777387 |
T |
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