View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10920_high_10 (Length: 224)
Name: NF10920_high_10
Description: NF10920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10920_high_10 |
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| [»] chr5 (5 HSPs) |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 1505963 - 1505817
Alignment:
| Q |
78 |
ttttaatatgatggtacatgttgaactctacacaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaag |
177 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1505963 |
ttttaatatgatggtaaatgttgaactctacacaagtttttcatccttacataaaaatcaagcaaatttgaaagtgatatatgaaaataaaataattaag |
1505864 |
T |
|
| Q |
178 |
catctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1505863 |
catctcatatagcaacactacgcaaaacaacagtttcaatagtaagt |
1505817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1506447 - 1506365
Alignment:
| Q |
1 |
ttacttcttaattataaatgatatatttttcaaataaataactatgtagaatataaagctaatgacaattatattatttttaa |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1506447 |
ttacttcttaattataaatgatatatttttcaaataaataactatgtagaatataaagctaatgacaattatattatttttaa |
1506365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 1493119 - 1493008
Alignment:
| Q |
114 |
tttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaa-ataattaagcatctcatatagcaacactacgcaaaacaacagtt |
212 |
Q |
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|||||| ||||||||| ||||| |||||||||| ||||||||| ||| ||||||| || ||||||||||| ||||||| ||||| ||||| |||||||| |
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| T |
1493119 |
tttttcttccttacataaaaataaagcaaatttaaaagtgataaatggaaataaatatgattaagcatcttatatagctacactgcgcaagacaacagtc |
1493020 |
T |
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| Q |
213 |
tcaatggtaagt |
224 |
Q |
| |
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|||||||||||| |
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| T |
1493019 |
tcaatggtaagt |
1493008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 1483099 - 1483033
Alignment:
| Q |
158 |
atgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
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||||||||||| ||||||||| | ||||||||| ||||| |||||||||| ||||||||||||||| |
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|
| T |
1483099 |
atgaaaataaactaattaagcttatcatatagccacactgtgcaaaacaacggtttcaatggtaagt |
1483033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 1500138 - 1500080
Alignment:
| Q |
166 |
aaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
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|||| |||| ||||||| ||||| | | |||| |||||||||||||||||||||||||| |
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| T |
1500138 |
aaaaaaattgagcatcttatataactatactatgcaaaacaacagtttcaatggtaagt |
1500080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 44142249 - 44142042
Alignment:
| Q |
11 |
attataaatgatatatttttcaaataaataactatgtagaatataaagctaatgacaattatattatttttaatatgatggtacatgttgaactctacac |
110 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |||| | |||| ||||| |||||||| |||||||||||||||||||||||||||||| || |
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| T |
44142249 |
attataaatgatacatttttcaaataaataactatatagagtttaaaactaatcacaattat-----ttttaatatgatggtacatgttgaactctagac |
44142155 |
T |
|
| Q |
111 |
aagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacag |
210 |
Q |
| |
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|||||||||| |||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||| |||||||||| ||||| || |||||||||| |
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| T |
44142154 |
aagtttttcaaccttacataaaaatcaagaaaatttgaaagtgatacaagataataaaataattaagcacctcatatagcgacactgcgtaaaacaacag |
44142055 |
T |
|
| Q |
211 |
tttcaatggtaag |
223 |
Q |
| |
|
||||||||||||| |
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| T |
44142054 |
tttcaatggtaag |
44142042 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 44133775 - 44133620
Alignment:
| Q |
67 |
aattatattatttttaatatgatggtacatgttgaactctacacaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaata |
166 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||||||| | || ||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
44133775 |
aattatattacttttaatattatgttacatgttgaa-tgtagacaggttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaata |
44133677 |
T |
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| Q |
167 |
aaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatggtaag |
223 |
Q |
| |
|
|||||| |||||| |||||||||| | ||| |||||||||||||||||||||||||| |
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|
| T |
44133676 |
aaataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaag |
44133620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 223
Target Start/End: Complemental strand, 44129623 - 44129415
Alignment:
| Q |
11 |
attataaatgatatatttttcaaataaataactat-gtagaatataaagctaatgacaa-ttatattatttttaatatgatggtacatgttgaactctac |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||| | ||| |||| |||||||| |||||||||||| ||||||||||| | || |
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| T |
44129623 |
attataaatgatatat----caaataaataactggagtagaatctaaaacaaatcacaaattatattacttttaatatgatattacatgttgaa-tgtag |
44129529 |
T |
|
| Q |
109 |
acaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaac |
208 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
44129528 |
acaggttattcatccttacaa-aaaatcaagcaaatttgaaagtgattcatgaaaataaaataattaagcacctcatatagcgacactgcgcaaaacaac |
44129430 |
T |
|
| Q |
209 |
agtttcaatggtaag |
223 |
Q |
| |
|
||||||||| ||||| |
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| T |
44129429 |
agtttcaatagtaag |
44129415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 95 - 224
Target Start/End: Original strand, 46706141 - 46706270
Alignment:
| Q |
95 |
atgttgaactctacacaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaagcatctcatatagcaaca |
194 |
Q |
| |
|
|||||||||| || || |||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||| ||| |
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|
| T |
46706141 |
atgttgaactgtagacgagtttttcatccttacataaaaatcaagcaaatttggaagtgataaataaaaataaaataattaagcatttcatatagcgaca |
46706240 |
T |
|
| Q |
195 |
ctacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
|
|| |||||||||||||||| ||||||||| |
|
|
| T |
46706241 |
ctgtgcaaaacaacagtttctatggtaagt |
46706270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 5303480 - 5303336
Alignment:
| Q |
79 |
tttaatatgatggtacatgttgaactctacacaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaagc |
178 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | | ||| ||||||||| | ||||| || |||||| ||| ||||||||||||| ||||||||||||| |
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|
| T |
5303480 |
tttaatatgagggtacatgttgaacactagatgaaattt-catccttacgtaaaaattaaacaaattgaaaattgatacatgaaaacaaaataattaagc |
5303382 |
T |
|
| Q |
179 |
atctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| |||||||| |||||| |
|
|
| T |
5303381 |
atctcatatagcgacactgcgcaaaacaaccgtttcaattgtaagt |
5303336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 5285373 - 5285148
Alignment:
| Q |
4 |
cttcttaattataaatgatatatttttcaaataaataactatg--tagaatataaagctaatgacaattatattatttttaatatgatggtacatgttga |
101 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||||| || ||||||||||||| |||||| ||||||||| |||||||||||| || |||| |
|
|
| T |
5285373 |
cttctttattataaatgatat-ttagtcaaataaataactattgttaatatataaagctaatcacaattgtattatttt-aatatgatggtatatattga |
5285276 |
T |
|
| Q |
102 |
actctacacaagtttttcatccttacatgaaaatcaagcaaatttgaaagtgatacatgaaa------ataaaataattaagcatctcatatagcaacac |
195 |
Q |
| |
|
|| ||| | | ||| ||||||||||| ||||| || |||||| ||| ||||| |||||| | |||| ||||||||||||||||| ||||||| |
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|
| T |
5285275 |
acactagatgaaattt-catccttacataaaaattaaacaaattgaaaattgataaatgaaagaaaagaaaaaaaaattaagcatctcatatggcaacac |
5285177 |
T |
|
| Q |
196 |
tacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
|
| ||||||||||| ||||||||||||||| |
|
|
| T |
5285176 |
tgcgcaaaacaacggtttcaatggtaagt |
5285148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 5288913 - 5288979
Alignment:
| Q |
158 |
atgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
5288913 |
atgaaaataaaataattaaacatctcatatggccacactacgtaaaacaacagtttcaatggtaagt |
5288979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 5316051 - 5315951
Alignment:
| Q |
119 |
catccttacatgaaaatcaagcaaatttgaaagtgatacatgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatg |
218 |
Q |
| |
|
|||| |||||| ||||| || ||||||||||| ||||||| |||||||| ||||||||||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
5316051 |
catcattacataaaaattaaacaaatttgaaatcgatacataaaaataaa-----taagcatctcatatagccacgctgcgcaaaacaaccgtttcaatg |
5315957 |
T |
|
| Q |
219 |
gtaagt |
224 |
Q |
| |
|
|||||| |
|
|
| T |
5315956 |
gtaagt |
5315951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 5311307 - 5311237
Alignment:
| Q |
153 |
gatacatgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatggtaagt |
224 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||| | ||||||||||||||||| ||||||||||||||| |
|
|
| T |
5311307 |
gataaatgaaaataaaata-ttaaacatctcatatggtcacactacgcaaaacaactgtttcaatggtaagt |
5311237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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