View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10920_low_1 (Length: 611)

Name: NF10920_low_1
Description: NF10920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10920_low_1
NF10920_low_1
[»] chr2 (35 HSPs)
chr2 (215-593)||(10372391-10372769)
chr2 (117-357)||(9357612-9357852)
chr2 (35-593)||(10353468-10354032)
chr2 (35-402)||(9283603-9283973)
chr2 (18-355)||(9316358-9316698)
chr2 (25-368)||(9321313-9321659)
chr2 (413-593)||(9292638-9292815)
chr2 (18-366)||(9292261-9292609)
chr2 (412-593)||(9321697-9321878)
chr2 (18-189)||(9060764-9060935)
chr2 (45-175)||(8573142-8573272)
chr2 (117-357)||(9329028-9329271)
chr2 (18-375)||(9274845-9275211)
chr2 (215-357)||(10348312-10348454)
chr2 (45-353)||(10336198-10336503)
chr2 (220-362)||(8572958-8573100)
chr2 (23-357)||(7115110-7115434)
chr2 (477-593)||(8572763-8572879)
chr2 (415-593)||(9060360-9060535)
chr2 (477-593)||(9316793-9316912)
chr2 (516-593)||(10336621-10336698)
chr2 (36-181)||(10348139-10348284)
chr2 (516-593)||(7114907-7114984)
chr2 (477-593)||(14551091-14551206)
chr2 (523-593)||(10348620-10348690)
chr2 (119-181)||(10372301-10372363)
chr2 (516-593)||(9275333-9275410)
chr2 (525-592)||(9357935-9358002)
chr2 (525-590)||(9329418-9329483)
chr2 (517-593)||(9283436-9283512)
chr2 (526-593)||(7612716-7612783)
chr2 (34-179)||(12018515-12018660)
chr2 (518-570)||(8577708-8577760)
chr2 (9-85)||(9328917-9328993)
chr2 (115-175)||(11987124-11987184)
[»] scaffold0667 (2 HSPs)
scaffold0667 (9-357)||(4804-5149)
scaffold0667 (500-593)||(5253-5346)
[»] chr3 (1 HSPs)
chr3 (34-593)||(37462844-37463409)
[»] chr4 (3 HSPs)
chr4 (35-375)||(26575220-26575563)
chr4 (475-593)||(26575648-26575766)
chr4 (516-574)||(561980-562038)
[»] chr1 (8 HSPs)
chr1 (500-584)||(29452622-29452706)
chr1 (477-584)||(29467096-29467203)
chr1 (477-581)||(29442633-29442737)
chr1 (500-584)||(29424008-29424092)
chr1 (118-176)||(29452955-29453013)
chr1 (25-179)||(29467429-29467582)
chr1 (122-274)||(29423702-29423854)
chr1 (118-175)||(29442970-29443027)
[»] chr8 (4 HSPs)
chr8 (500-570)||(41966007-41966077)
chr8 (220-353)||(41966185-41966318)
chr8 (116-179)||(41966362-41966425)
chr8 (18-88)||(41966453-41966523)
[»] chr5 (1 HSPs)
chr5 (531-593)||(36225575-36225637)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 215 - 593
Target Start/End: Original strand, 10372391 - 10372769
Alignment:
Q  215 tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 314  Q
    |||| |||||||||||||| ||||| ||||    |||||||| | ||||||||||||||| || |||||| |||| | |   ||| |   |||||||||     
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttcattggggtcacaagggttaatgaaagcgaa 10372490  T
Q  315 ttcgccattggagatggcgaggaggccgttacatgaaccgatacgagtcatggtgttgttaacctcgaaagggtcgatgttgctggtgttacccgccgtg 414  Q
    || ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10372491 tttgccgttgcagatggcgaggaggccgttacatgaaccgatacgagtcatggtgttgttaacctcgaaagggtcaatgttgctggtgttacccgccgtg 10372590  T
Q  415 aaaggatggttgagtggaatcctcgatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372591 aaaggatggttgagtggaatcctcgatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatc 10372690  T
Q  515 gattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  10372691 gattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcg 10372769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 117 - 357
Target Start/End: Original strand, 9357612 - 9357852
Alignment:
Q  117 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtta 9357711  T
Q  217 gggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgattt 316  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357712 gggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgattt 9357811  T
Q  317 cgccattggagatggcgaggaggccgttacatgaaccgata 357  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9357812 cgccattggagatggcgaggaggccgttacatgaaccgata 9357852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 35 - 593
Target Start/End: Original strand, 10353468 - 10354032
Alignment:
Q  35 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 134  Q
    ||||||||| |||||| ||||||||||||||||| |||||||||||||||| || |||||||||||||| ||||  ||  ||   |||||||||||||||    
T  10353468 taggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggag 10353567  T
Q  135 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc---gtcaatgttgaaagatcggagaatgttagggataggaagaggg 231  Q
    |||||||||||||| || || ||||||||||||||| ||||||||||  | |||   || |  ||||  |||| ||||||||||||||||||||||||||    
T  10353568 tttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgttagggataggaagaggg 10353667  T
Q  232 aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg 331  Q
    || ||||| |||||  |||| |||| | |||| |||||||| |||| ||||||||||| ||||||||||||| ||||||| ||| |||| | ||| ||||    
T  10353668 agaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaaagctattacgccgtgggacatgg 10353767  T
Q  332 cgaggaggccgttacatgaaccgatacgagtcatggtgttgttaacctcgaaagggtcgatgttgctggtgttacccgccgtgaaaggatggttgagtgg 431  Q
    |||||||||||||||||||||||||| |||| |||||||||||| ||| |||||| ||||||||| || |||| |   | |||||||| |||||| ||||    
T  10353768 cgaggaggccgttacatgaaccgataagagtaatggtgttgttacccttgaaaggatcgatgttggtgctgttgc---cggtgaaagggtggttgtgtgg 10353864  T
Q  432 a------atcctcgatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaa 525  Q
    |      | | ||||| |      ||||     ||| ||||||||||  | |||||||| ||||||||||  | |||| ||||||||| ||||| |||||    
T  10353865 aaaaagtaacatcgatgtgtctggatcagagaaatcatcatcgattttaatttggtagatatcgaatttgaatcgaagaattaaggattgattgggggaa 10353964  T
Q  526 ttttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  10353965 tttctgaggtgaaggttgatgaatttgttggaatcgattagggatttaaatgattttgaagttgatcg 10354032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 35 - 402
Target Start/End: Complemental strand, 9283973 - 9283603
Alignment:
Q  35 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 134  Q
    ||||||||| |||||| |||||||||||  |||| ||||||||| |||||||||||||||||| ||||| |||||| |||| ||||||||||| ||||||    
T  9283973 taggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggag 9283874  T
Q  135 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgttagggataggaagaggg 231  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||   |||    | ||||||||||||||||||||||    
T  9283873 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatgttagggataggaagaggg 9283774  T
Q  232 aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg 331  Q
    || ||||| |||||   |||||||| | |||||| ||||||||||| ||||||  | ||| |||| |||||| | ||||| |||  ||||||| ||||||    
T  9283773 agaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttcagttgcgtcgtttggatgcgtaaaagcaattgggccattgtagatgg 9283674  T
Q  332 cgaggaggccgttacatgaaccgatacgagtcatggtgttgttaacctcgaaagggtcgatgttgctggtg 402  Q
    |||||||||||||||||||||| ||| ||| | || || |||||| |  |||||| ||||||||| |||||    
T  9283673 cgaggaggccgttacatgaaccaataagagccttgatgctgttaagcgtgaaaggatcgatgttggtggtg 9283603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 9316358 - 9316698
Alignment:
Q  18 aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac 117  Q
    |||||| |||||||| || ||||||  |||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |   |    |  | | | |    
T  9316358 aagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatc 9316457  T
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatg---ttgaaagatcggagaatgt 214  Q
    ||||| |||||||||||||||||||| || ||| | |||||||||||||||||||||||||||| |||||||  | ||   |||  ||||   |||||||    
T  9316458 caagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagattcaagaatgt 9316557  T
Q  215 tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 314  Q
    ||||||||| |||||| |||||||| |||||  ||||||||| | |||||||||||||||||| ||||||||||||| ||| ||||||| ||||||||||    
T  9316558 tagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcatgaaagcgat 9316657  T
Q  315 ttcgccattggagatggcgaggaggccgttacatgaaccga 355  Q
    ||  |||||||| |||||||| |||||||||||||||||||    
T  9316658 ttgaccattggaaatggcgagaaggccgttacatgaaccga 9316698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 25 - 368
Target Start/End: Original strand, 9321313 - 9321659
Alignment:
Q  25 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 124  Q
    |||||||| || ||||||| |||||| ||||||||| |  |||| ||||||||||||||||||| |||||||| ||| | | ||||| ||||||||||||    
T  9321313 tacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagaga 9321412  T
Q  125 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgttagggat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  | || |   |  ||||||   |||   | ||||| ||||||    
T  9321413 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcagcgattgatgttgtcggattccataatgtcagggat 9321512  T
Q  222 aggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgcca 321  Q
    ||||||||| |||||||| || ||  |||| ||||   || ||||||||||||||| ||||||||||| |  |||||||||  ||||||| | || |||     
T  9321513 aggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgttggggttgttaggatgattgaaagccagttggccg 9321612  T
Q  322 ttggagatggcgaggaggccgttacatgaaccgatacgagtcatggt 368  Q
    | |||||||||||||||||||||||| ||||||||| ||| ||||||    
T  9321613 tgggagatggcgaggaggccgttacaggaaccgataagagccatggt 9321659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 413 - 593
Target Start/End: Original strand, 9292638 - 9292815
Alignment:
Q  413 tgaaaggatggttgagtggaatcctcgatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaagga 512  Q
    ||||||||||||||||||||||  |||| || |||||||||||||||||   ||||||||||||||||||||||||||||||| || |||||||||||||    
T  9292638 tgaaaggatggttgagtggaataatcgacttggagaaatcatcatcatc---atcgatttggagttggtagagatcgaatttgtgtcgaaggattaagga 9292734  T
Q  513 tcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||| ||||||||||||| ||||||||||||  ||||  |||| |||||||||| |||||||| ||||||||||||||||||    
T  9292735 tcggttgagggaatttttgaggtgaaggttagtgaagctgtgagaatcgattagggatttaagtgattttgaaattgatcg 9292815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 9292261 - 9292609
Alignment:
Q  18 aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac 117  Q
    |||||| |||||||| |||||||| | |||||| ||||| |||||  |||| |||||||| || ||||   ||| ||||| ||  | |||   | ||| |    
T  9292261 aagagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtctcacctgtg---gatcaaaagagtaatgtaggtcggctatc 9292357  T
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg---tcaatgttgaaagatcggagaatgt 214  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||   ||||||||   |||   ||||||||    
T  9292358 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacaccggcgcgatcaatgttttcagactcgagaatgt 9292457  T
Q  215 tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 314  Q
    ||||||||| ||||||||| ||||| |||||  ||||||||    ||||||||||| ||| || ||||||||| | ||||| ||||||| ||||   |||    
T  9292458 tagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcagat 9292557  T
Q  315 ttcgccattggagatggcgaggaggccgttacatgaaccgatacgagtcatg 366  Q
    || || |||||| |||||||||||||||||||||||||| ||| ||| ||||    
T  9292558 ttggctattggaaatggcgaggaggccgttacatgaaccaataagaggcatg 9292609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 412 - 593
Target Start/End: Original strand, 9321697 - 9321878
Alignment:
Q  412 gtgaaaggatggttgagtggaatcctc---gatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggatta 508  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||| |||||| |||||    
T  9321697 gtgaaaggatggttgagtggaatcatcatggatttagagaaatcatcatgatc---atcgatttggagttggtagagatcgaatttgtgttgaatgatta 9321793  T
Q  509 aggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||||||| |||||||||||| ||| |||||||||||||| | ||| |||||||||| |||||||| |||||| ||| |||||||    
T  9321794 aggatcgactgagggaatttttgagatgaaggttgatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcg 9321878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 9060935 - 9060764
Alignment:
Q  18 aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac 117  Q
    |||||| |||||||| || ||||||  |||||| ||||||||||||||||||||||| ||||||||||||| |||||||  ||||| | |||  | ||||    
T  9060935 aagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataac 9060836  T
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccg 189  Q
    |||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||    
T  9060835 caagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccg 9060764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 8573272 - 8573142
Alignment:
Q  45 tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagtttgtaatcg 144  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||||||||||| | | ||| ||||||||||||||||| ||||||||||||||||    
T  8573272 tttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggaggagtttgtaatcg 8573173  T
Q  145 ccggttaaaggatcaaaaccgaagccgtgaa 175  Q
     |||||||  |||||||||||||||||||||    
T  8573172 gcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 117 - 357
Target Start/End: Original strand, 9329028 - 9329271
Alignment:
Q  117 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtca---atgttgaaagatcggagaatg 213  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||    |  |  |   ||||||  ||||   ||||||    
T  9329028 ccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatg 9329127  T
Q  214 ttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcga 313  Q
    |||||||||| |||||| |||||||| |||||  ||||||||| | |||||||||||||||||| ||||||||||| | ||||||| | ||| |||||||    
T  9329128 ttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggggccgttagggtccctaaaagcga 9329227  T
Q  314 tttcgccattggagatggcgaggaggccgttacatgaaccgata 357  Q
    ||| ||||| |||||| || | ||||||||| ||||||||||||    
T  9329228 tttggccataggagatagcaatgaggccgttgcatgaaccgata 9329271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 9274845 - 9275211
Alignment:
Q  18 aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaac 117  Q
    |||||| |||||||| || ||||||| |||||| ||||||||||||||||| |||||||| |||||||| | |   |||| ||  | || |    |||||    
T  9274845 aagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattca---aaagagtaatgtatatcagctaac 9274941  T
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc------------gtcaatgttgaaagatc 205  Q
    || ||||||||||| ||||| |||||||||| ||||||||||||||| || ||||||||  | ||| |||             ||||||||||   |||     
T  9274942 catgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaacaaacacagcgcacaaagcaacactgtcaatgttgtctgatt 9275041  T
Q  206 ggagaatgttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcct 305  Q
     |||||||||||| |||||||||||||| ||||| |||||  ||||||||| | ||||||||||||||||||  ||||| || ||  ||| |||||||||    
T  9275042 tgagaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcct 9275141  T
Q  306 gaaagcgatttcgccattggagatggcgaggaggccgttacatgaaccgatacgagtcatggtgttgtta 375  Q
    ||| ||| ||| |||||||||||| || | |||||||||||||||||| ||| ||| ||||||| |||||    
T  9275142 gaaggcggtttggccattggagatagcaatgaggccgttacatgaacctataagagccatggtgctgtta 9275211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 215 - 357
Target Start/End: Original strand, 10348312 - 10348454
Alignment:
Q  215 tagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgat 314  Q
    |||| |||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| ||||||||||  |  |||||||||| ||||| ||||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaaaacgat 10348411  T
Q  315 ttcgccattggagatggcgaggaggccgttacatgaaccgata 357  Q
    | | ||  |||||||||||||||||||||||||||||||||||    
T  10348412 tacccctgtggagatggcgaggaggccgttacatgaaccgata 10348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 45 - 353
Target Start/End: Original strand, 10336198 - 10336503
Alignment:
Q  45 tttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaag---ggttttttagagagactaaccaagagattctgaggagtttgtaa 141  Q
    |||||| |||||||||||| |||| |||||| | | |||||||| || |||||   ||| || ||||  ||| |||||||||||||||||||||||||||    
T  10336198 tttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaa 10336297  T
Q  142 tcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgttaggg-ataggaagagggaggaaagga 240  Q
    ||| ||| ||| | |||||||||||| ||||||||||||| | ||      ||||||  ||||  ||||| |  |||| ||||||||||||||  ||||     
T  10336298 tcggcggataatgaatcaaaaccgaatccgtgaacgcataaagcg------atgttgtcagat-tgagaacgagagggaataggaagagggagataaggg 10336390  T
Q  241 ataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggc 340  Q
    |||||  ||||||||| |||| |||| || |||| || |||||| ||||||| || ||| |   ||||||||||||||||||||||||||||||||||||    
T  10336391 ataatccgatgtttacggatggtaggattacagaatgcgatttcattggcggagtaagggttagtgaaagcgatttcgccattggagatggcgaggaggc 10336490  T
Q  341 cgttacatgaacc 353  Q
    | || ||||||||    
T  10336491 cattgcatgaacc 10336503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 220 - 362
Target Start/End: Complemental strand, 8573100 - 8572958
Alignment:
Q  220 ataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgc 319  Q
    |||||||||||||| ||||| |||||||||||||||| | |||||||||||||||||| ||||| ||||||| | ||||| ||  | |||||||||   |    
T  8573100 ataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgcgatttggttggcgtcattaggttgagtcaaagcgattaaac 8573001  T
Q  320 cattggagatggcgaggaggccgttacatgaaccgatacgagt 362  Q
    |||| || |||||||||||||||||||||||||||||| ||||    
T  8573000 cattagaaatggcgaggaggccgttacatgaaccgataagagt 8572958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 23 - 357
Target Start/End: Complemental strand, 7115434 - 7115110
Alignment:
Q  23 catacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaaga 122  Q
    ||||||||||   |||||| | |||||| |||||||||||||| || ||||||||||  ||||||| |||||||| ||||  | ||  |  |||||||||    
T  7115434 catacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaaga 7115335  T
Q  123 gattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacacc---gccgtcaatgttgaaagatcggagaatgttaggg 219  Q
    ||||||||| |||||||||||  | |||||||||||||||||||||||||||| ||||| |||   ||| |  ||| ||  |||| | | ||||||||||    
T  7115334 gattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacctaagccattgatgatgtcagattgaataatgttaggg 7115235  T
Q  220 ataggaagagggaggaaaggaataatgt--gatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttc 317  Q
    |||||||               | ||||  ||||||||| | |||||| ||||||||||| ||||||  | |||   ||||||| | | ||||||||||     
T  7115234 ataggaa---------------tgatgtccgatgtttacgggtgttagtgttccagattgtgatttcagttgcgtgattaggatacgtaaaagcgatttg 7115150  T
Q  318 gccattggagatggcgaggaggccgttacatgaaccgata 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7115149 gccattggagatggcgaggaggccgttacatgaaccgata 7115110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 477 - 593
Target Start/End: Complemental strand, 8572879 - 8572763
Alignment:
Q  477 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaat 576  Q
    |||||||| |||| | |||||| ||| ||||||||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||||  ||||||| |    
T  8572879 ttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttttgaggtgaaggttggtgaagttgtgggaatcgattatagatttaagt 8572780  T
Q  577 gattttgaaattgatcg 593  Q
    ||||||||| |||||||    
T  8572779 gattttgaagttgatcg 8572763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 415 - 593
Target Start/End: Complemental strand, 9060535 - 9060360
Alignment:
Q  415 aaaggatggttgagtggaatcctcgatttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatc 514  Q
    |||||||||||||| || ||| | |||||||||||||||||||||||| |      ||||||||||||||||||| ||||| || |||||||||   |||    
T  9060535 aaaggatggttgagcggtatcattgatttagagaaatcatcatcatcgac------ttggagttggtagagatcggatttgtgtcgaaggattataaatc 9060442  T
Q  515 gattgagggaatt---ttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||||||| |||   || ||||| ||||||  |||| ||||| ||||||||||||||||||| |||||||||| |||||||    
T  9060441 gattgaggggattatttttgaggtaaaggttagtgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcg 9060360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 477 - 593
Target Start/End: Original strand, 9316793 - 9316912
Alignment:
Q  477 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaatt---ttggaggtgaaggttgatgaatttgtgggaatcgattaaggattta 573  Q
    ||||||||| ||| |||||   |||||||||||||||||||||||||||||   || |||||||||||||||||| ||||| ||||| ||||| ||||||    
T  9316793 ttggtagagttcggatttgtaatgaaggattaaggatcgattgagggaattatttttgaggtgaaggttgatgaagttgtgagaatctattaaagattta 9316892  T
Q  574 aatgattttgaaattgatcg 593  Q
    | |||||||||| |||||||    
T  9316893 agtgattttgaagttgatcg 9316912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 516 - 593
Target Start/End: Original strand, 10336621 - 10336698
Alignment:
Q  516 attgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||  |||||||    
T  10336621 attgagggaattttgaaggtgaaggttgatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcg 10336698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 10348139 - 10348284
Alignment:
Q  36 aggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggagt 135  Q
    ||||||||  ||||| ||||||||||||||||| |||||||| || |||| || |||||||||||| | ||||  || |||   ||| ||||||||||||    
T  10348139 aggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagt 10348238  T
Q  136 ttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 181  Q
    |||||||| |||| ||   |||||||||||||||||||||||||||    
T  10348239 ttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 516 - 593
Target Start/End: Complemental strand, 7114984 - 7114907
Alignment:
Q  516 attgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||| ||||||||  || |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  7114984 attgaaggaatttttaagatgaaggttgatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcg 7114907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 477 - 593
Target Start/End: Original strand, 14551091 - 14551206
Alignment:
Q  477 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaat 576  Q
    ||||||||||| | | ||| || ||||||||||||| | ||||||||||||||  |||||||| |||||||| |||||||||||||||| ||||| || |    
T  14551091 ttggtagagattggacttgtgtcgaaggattaaggaacaattgagggaattttt-aggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 14551189  T
Q  577 gattttgaaattgatcg 593  Q
    ||||||||| |||||||    
T  14551190 gattttgaagttgatcg 14551206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 10348620 - 10348690
Alignment:
Q  523 gaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||    
T  10348620 gaattttttaggtgaaggttgatgaatttgagggaatcgattaaggatttaagtgattttgaggttgatcg 10348690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  119 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 181  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 516 - 593
Target Start/End: Original strand, 9275333 - 9275410
Alignment:
Q  516 attgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||| || || ||||||| ||||||||| ||||||||    
T  9275333 attgagggaatttttgagatgaaggttgatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcg 9275410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 9357935 - 9358002
Alignment:
Q  525 attttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatc 592  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||||||||||| |||||||||| ||||||    
T  9357935 atttttgaggtgaaggtttatgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatc 9358002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 525 - 590
Target Start/End: Original strand, 9329418 - 9329483
Alignment:
Q  525 attttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattga 590  Q
    ||||| ||||||||||||  |||| |||||||||||||||| |||||||| |||||||||| ||||    
T  9329418 atttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaagtgattttgaagttga 9329483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 593
Target Start/End: Complemental strand, 9283512 - 9283436
Alignment:
Q  517 ttgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |||| ||||  || |||||| ||| |||||||    
T  9283512 ttgagggaacttttgaggtgaaggttgatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcg 9283436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 526 - 593
Target Start/End: Original strand, 7612716 - 7612783
Alignment:
Q  526 ttttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    |||| ||||||||||||  |||| ||||||||||| |||||||||||||  ||||| |||||||||||    
T  7612716 tttttgaggtgaaggtttgtgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcg 7612783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 12018660 - 12018515
Alignment:
Q  34 ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga 133  Q
    ||||||| || |||||| ||||| |||||  || || |||||||||||| ||||| | ||  | |||| | ||||   || ||||||||||||||||  |    
T  12018660 ctaggaagtactttccacgagttcgtttttgaggtatagagtctgacatatgaatcaaaagtacggttgtgtagatcaacaaaccaagagattctgacaa 12018561  T
Q  134 gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 179  Q
    |||| |||||   ||  |||||||||||||||||||||| ||||||    
T  12018560 gtttataatcagaggacaaaggatcaaaaccgaagccgtaaacgca 12018515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 570
Target Start/End: Complemental strand, 8577760 - 8577708
Alignment:
Q  518 tgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggat 570  Q
    ||||||| |||| ||||| || ||||||||| ||||||||||| |||||||||    
T  8577760 tgagggagtttttgaggtaaaagttgatgaagttgtgggaatcaattaaggat 8577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 9328917 - 9328993
Alignment:
Q  9 agcagagacaagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtg 85  Q
    |||| |||||||||| || |||||   |||||||| |||||| |||||||||||  || | ||||||||||||||||    
T  9328917 agcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtg 9328993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 11987184 - 11987124
Alignment:
Q  115 aaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 175  Q
    |||||||||||||||| |||||||||||||   |  ||||||||||| ||||| |||||||    
T  11987184 aaccaagagattctgatgagtttgtaatcggatgaaaaaggatcaaagccgaatccgtgaa 11987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 172; Significance: 4e-92; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 4804 - 5149
Alignment:
Q  9 agcagagacaagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttaga 108  Q
    |||| ||||||| || ||||||||  ||||||||| |||||| ||||| |||||||||||||||||||| ||||||| || |||||||||||||| ||||    
T  4804 agcaaagacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtaga 4903  T
Q  109 gagactaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcgga 208  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    || ||  |||| |   ||| |||    
T  4904 gagactaaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcg---gat-gga 4999  T
Q  209 gaatg-ttagggataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctga 307  Q
    ||| |   ||  ||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  5000 gaacgaggagtaataggtagagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctga 5099  T
Q  308 aagcgatttcgccattggagatggcgaggaggccgttacatgaaccgata 357  Q
     |||||||||||| ||||| | ||||||||||||||||||||||||||||    
T  5100 gagcgatttcgccgttggaaacggcgaggaggccgttacatgaaccgata 5149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 500 - 593
Target Start/End: Original strand, 5253 - 5346
Alignment:
Q  500 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||||| ||||||| |||||||||||||| | |||||||||||||||| ||||| |||||||||| |||||||| |||||||||| |||||||    
T  5253 gaaggatgaaggatctattgagggaatttttgcggtgaaggttgatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcg 5346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 34 - 593
Target Start/End: Original strand, 37462844 - 37463409
Alignment:
Q  34 ctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgagga 133  Q
    ||||||| || |||||| |||||||||||  |||| |||||||| ||||||| || |||||||||||||| ||||  ||  | |||||||||||||||||    
T  37462844 ctaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgagga 37462943  T
Q  134 gtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata--ca-ccgccgtcaatgttgaaagatcggagaatgttagggataggaagagg 230  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  || |||| || |  ||||   |||   | ||||| ||||| ||| | |||    
T  37462944 gtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatgtaagggacaggcatagg 37463043  T
Q  231 gaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatg 330  Q
    ||| ||||| |||||  |||||||||   |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||     
T  37463044 gagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcgatttggccattggagata 37463143  T
Q  331 gcgaggaggccgttacatgaaccgatacgagtcatggtgttgttaacc---tcgaaagggtcgatgttgctggtgttacccgccgtgaaaggatggttga 427  Q
    ||||||||||||||||||||||||||| ||| ||||||| ||| |  |     | |||| |||||||||  | ||||||   |  |||||||||||||||    
T  37463144 gcgaggaggccgttacatgaaccgataagagccatggtgctgtcacgccgtgtgtaaggatcgatgttggggctgttac---ctttgaaaggatggttga 37463240  T
Q  428 gtggaatcctcga---------tttagagaaatcatcatcatcgtcatcgatttggagttggtagagatcgaatttgcgttgaaggattaaggatcgatt 518  Q
    |||||||  ||||          ||||||||||| | |      |||||||||||||||||||||| |||| | |||  | ||| ||||| |||| ||||    
T  37463241 gtggaataatcgaattgattcgattagagaaatcgtta------tcatcgatttggagttggtagatatcggagttgtttcgaatgattacggattgatt 37463334  T
Q  519 gagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||| ||||| ||| |||||||||||||| ||||| ||||||||||| ||||||| |||||||||| |||||||    
T  37463335 gaggggatttttgagatgaaggttgatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcg 37463409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 35 - 375
Target Start/End: Original strand, 26575220 - 26575563
Alignment:
Q  35 taggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagagattctgaggag 134  Q
    ||||||||| |||||| ||||||||||||||||| |||||||| ||||||| || |||||||||||||| ||||  ||  ||  ||||||||||||||||    
T  26575220 taggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggag 26575319  T
Q  135 tttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgcc---gtcaatgttgaaagatcggagaatgttagggataggaagaggg 231  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||  | |||    | |  ||||  |||| |||||||||||||||| |||||||||    
T  26575320 tttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgttagggatgggaagaggg 26575419  T
Q  232 aggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgccattggagatgg 331  Q
    || ||||| |||||  ||| ||||| | ||| |||||||||||||| ||||||||||| |||||| |||||| ||||||| ||| |||| | ||| ||||    
T  26575420 agaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaaagccattacgccgtgggacatgg 26575519  T
Q  332 cgaggaggccgttacatgaaccgatacgagtcatggtgttgtta 375  Q
    |||||||||||||||||||||||||| |||| | ||||||||||    
T  26575520 cgaggaggccgttacatgaaccgataagagtaagggtgttgtta 26575563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 475 - 593
Target Start/End: Original strand, 26575648 - 26575766
Alignment:
Q  475 agttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaa 574  Q
    |||||||||| ||||||||||  | |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||| ||||||    
T  26575648 agttggtagatatcgaatttgaatcgaaggattaaggatcgattgggggaatttctgaggtgaaggttgatgaatttgtaggaatcgattaagaatttaa 26575747  T
Q  575 atgattttgaaattgatcg 593  Q
     |||||||||| |||||||    
T  26575748 gtgattttgaagttgatcg 26575766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 561980 - 562038
Alignment:
Q  516 attgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaa 574  Q
    ||||||||| |||| ||||||||||||  |||| |||||||||||||||| ||||||||    
T  561980 attgagggagtttttgaggtgaaggttagtgaagttgtgggaatcgattatggatttaa 562038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 584
Target Start/End: Complemental strand, 29452706 - 29452622
Alignment:
Q  500 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttga 584  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||| || |||||||||    
T  29452706 gaaggattaaggaacgattgagggaattttggaggtgaagtttgatgaagttgtgagaatcgattagggattgaagtgattttga 29452622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 477 - 584
Target Start/End: Complemental strand, 29467203 - 29467096
Alignment:
Q  477 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaat 576  Q
    |||||||| |||| | ||| || ||||||||||| | ||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||| || |    
T  29467203 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttcggaggtgaagtttgatgaagttgtgggaatcgattagggattgaagt 29467104  T
Q  577 gattttga 584  Q
    ||||||||    
T  29467103 gattttga 29467096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 477 - 581
Target Start/End: Complemental strand, 29442737 - 29442633
Alignment:
Q  477 ttggtagagatcgaatttgcgttgaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaat 576  Q
    |||||||| ||| || ||| || ||||||||||||| ||||||||| |||||||||||||||| |||||||| || ||||||||||||| ||||| || |    
T  29442737 ttggtagaaatcaaagttgtgtcgaaggattaaggaacgattgaggaaattttggaggtgaagtttgatgaagttatgggaatcgattagggattgaagt 29442638  T
Q  577 gattt 581  Q
    |||||    
T  29442637 gattt 29442633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 500 - 584
Target Start/End: Original strand, 29424008 - 29424092
Alignment:
Q  500 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttga 584  Q
    ||||||||||||| ||||||| |||||| ||||||||||| ||||||||  |||||||||||||||  |||| || |||||||||    
T  29424008 gaaggattaaggaacgattgaaggaattatggaggtgaagcttgatgaagctgtgggaatcgattagagattgaagtgattttga 29424092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaac 176  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 29467582 - 29467429
Alignment:
Q  25 tacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaatgataaaaagggttttttagagagactaaccaagaga 124  Q
    |||||||| |||| || || |||||||||||| |||||| |||| |||||| | |||||||||| || |    |||  | |||   ||| || |||||||    
T  29467582 tacggcatactagaaagtactttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagaga 29467483  T
Q  125 ttctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 179  Q
    ||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||    
T  29467482 ttctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 274
Target Start/End: Original strand, 29423702 - 29423854
Alignment:
Q  122 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacaccgccgtcaatgttgaaagatcggagaatgtt-aggga 220  Q
    ||||| ||||||||||||||||  | ||||| ||||||||||||||||||| |||||| |   || |||  ||||||  || |   |||||||| ||||     
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgcaaaagtcggcgtagatgttgttaggttc-agaatgttgagggg 29423800  T
Q  221 taggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccaga 274  Q
    |||||| ||||||| |||| |||||| |||||||||||||| ||||||||||||    
T  29423801 taggaatagggagggaagggataatgcgatgtttacagatggtagggttccaga 29423854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  118 caagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaa 175  Q
    ||||||||||||| |||||||||||||  ||| || ||||||||||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 500 - 570
Target Start/End: Complemental strand, 41966077 - 41966007
Alignment:
Q  500 gaaggattaaggatcgattgagggaattttggaggtgaaggttgatgaatttgtgggaatcgattaaggat 570  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||| |||||||||||||||||||||    
T  41966077 gaaggattaaggatcgattgagggattttctgaggtgaaggttgatgaagttgtgggaatcgattaaggat 41966007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 220 - 353
Target Start/End: Complemental strand, 41966318 - 41966185
Alignment:
Q  220 ataggaagagggaggaaaggaataatgtgatgtttacagatgttagggttccagattgagatttcgttggcggcgttaggatgcctgaaagcgatttcgc 319  Q
    ||||||| |||||| ||||| |||||  ||||||||||||||||||||||||||| || |||||| ||   | ||| ||| |    |||| |||||||||    
T  41966318 ataggaatagggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttcatttttgtcgtaagggttagagaaatcgatttcgc 41966219  T
Q  320 cattggagatggcgaggaggccgttacatgaacc 353  Q
    |||||||||||  |||||||||||||||||||||    
T  41966218 cattggagatgcagaggaggccgttacatgaacc 41966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 41966425 - 41966362
Alignment:
Q  116 accaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgca 179  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||||| |||||||||||    
T  41966425 accaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 41966523 - 41966453
Alignment:
Q  18 aagagcatacggcatgctaggaattaatttccaggagtttgttttcaagctaaagagtctgacatgtgaat 88  Q
    ||||||||||||||| || ||||||| |||||| |||||  ||||  ||||||| || |||||||||||||    
T  41966523 aagagcatacggcattctgggaattattttccacgagttgtttttagagctaaatagcctgacatgtgaat 41966453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 36225575 - 36225637
Alignment:
Q  531 gaggtgaaggttgatgaatttgtgggaatcgattaaggatttaaatgattttgaaattgatcg 593  Q
    ||||||||| ||  |||| ||||| ||||||||||| ||||||| |||||||||| |||||||    
T  36225575 gaggtgaagattagtgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcg 36225637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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