View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10920_low_2 (Length: 477)

Name: NF10920_low_2
Description: NF10920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10920_low_2
NF10920_low_2
[»] chr2 (5 HSPs)
chr2 (1-461)||(31026719-31027190)
chr2 (260-461)||(33802306-33802507)
chr2 (260-461)||(33806788-33806989)
chr2 (363-459)||(33811418-33811514)
chr2 (1-37)||(37402083-37402119)
[»] chr8 (2 HSPs)
chr8 (3-35)||(12985418-12985450)
chr8 (2-32)||(1926012-1926042)
[»] chr4 (1 HSPs)
chr4 (1-96)||(40224438-40224533)
[»] chr3 (1 HSPs)
chr3 (5-39)||(40150568-40150602)
[»] chr1 (1 HSPs)
chr1 (1-34)||(14332432-14332465)
[»] chr6 (1 HSPs)
chr6 (3-39)||(12627813-12627849)


Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 31026719 - 31027190
Alignment:
Q  1 tgacataattcaatgtaatcatatatgtcggtgtctgacgtaatatgtatctggcactgtgacacatctaatccgtggagtatctgtacttgatag---- 96  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | |||||| |||||||||||||||||||||||| ||||        
T  31026719 tgacataattcaatgtaatcatatatgtcggtgtcggacgtaatatgtatctggcatcgagacacacctaatccgtggagtatctgtacttcatagtccc 31026818  T
Q  97 -------tccagtatgatgtcattgagtgaaggtaattattagtacaactctttggatgtaatgtaatccatcatctgatccaactttggaacaactaca 189  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31026819 ttcatagtccagtatgatgtcattgagtgaaggtaattattagtacaactctttggatgtaatgtaatccatcatctgatccaactttggaacaactaca 31026918  T
Q  190 tttgacttattagatatttttgcatatatttcatccaagagagagtggcctcttatcttgtgtatgttcattcttttcaaccatttccacttaacaaatt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  31026919 tttgacttattagatatttttgcatatatttcatccaagagagagtggcctcttctcttgtgtatgttcattcttttcaaccaattccacttaacaaatt 31027018  T
Q  290 ccatagttttcttccttgtaaatcatacaaggtaggaactaaaacatgggaacacaacattggnnnnnnncgaatgttgtttatgttctgtccatctcca 389  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  31027019 ccatagttttcttccttgtaaatcctacaaggtaggaactaaaacatgggaacacaacattggtttttttcgaatgttgtttatgttctgtccatctcca 31027118  T
Q  390 tcctcttgatcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatggaag 461  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31027119 tcctcttggtcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatggaag 31027190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 260 - 461
Target Start/End: Complemental strand, 33802507 - 33802306
Alignment:
Q  260 ttcttttcaaccatttccacttaacaaattccatagttttcttccttgtaaatcatacaaggtaggaactaaaacatgggaacacaacattggnnnnnnn 359  Q
    ||||||||||||  ||||| || | |||||||||| |||| ||||||||||||  | | | |||| |||||||||||||||||| ||||||||           
T  33802507 ttcttttcaaccgattccattttaaaaattccataattttgttccttgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttat 33802408  T
Q  360 cgaatgttgtttatgttctgtccatctccatcctcttgatcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatgga 459  Q
    |  ||||||||  || ||| | |||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33802407 cctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgtttatgtgatattcaatatattggcacaatctcacctgggatgga 33802308  T
Q  460 ag 461  Q
    ||    
T  33802307 ag 33802306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 260 - 461
Target Start/End: Complemental strand, 33806989 - 33806788
Alignment:
Q  260 ttcttttcaaccatttccacttaacaaattccatagttttcttccttgtaaatcatacaaggtaggaactaaaacatgggaacacaacattggnnnnnnn 359  Q
    ||||||||||||  ||||| || | |||||||||| |||| ||||||||||||  | | | |||| |||||||||||||||||| ||||||||           
T  33806989 ttcttttcaaccgattccattttaaaaattccataattttgttccttgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttat 33806890  T
Q  360 cgaatgttgtttatgttctgtccatctccatcctcttgatcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatgga 459  Q
    |  ||||||||  || ||| | |||||||| ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33806889 cctatgttgttgttggtcttttcatctccaccctattgatcatgtccaaaccgtgtttatgtgatattcaatatattggcacaatctcacctgggatgga 33806790  T
Q  460 ag 461  Q
    ||    
T  33806789 ag 33806788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 363 - 459
Target Start/End: Original strand, 33811418 - 33811514
Alignment:
Q  363 atgttgtttatgttctgtccatctccatcctcttgatcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatgga 459  Q
    ||||||||  || ||| |||||||||| |||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  33811418 atgttgttgttggtctttccatctccaccctactgatcatgtccaaactgtgtttatgtgatattcaatatattggcacaatctcacctgggatgga 33811514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37402119 - 37402083
Alignment:
Q  1 tgacataattcaatgtaatcatatatgtcggtgtctg 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  37402119 tgacataattcaatgtaatcatatgtgtcagtgtctg 37402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 12985418 - 12985450
Alignment:
Q  3 acataattcaatgtaatcatatatgtcggtgtc 35  Q
    |||||||||||||||||||||||||||||||||    
T  12985418 acataattcaatgtaatcatatatgtcggtgtc 12985450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 1926012 - 1926042
Alignment:
Q  2 gacataattcaatgtaatcatatatgtcggt 32  Q
    |||||||||||||||||||||||||||||||    
T  1926012 gacataattcaatgtaatcatatatgtcggt 1926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40224533 - 40224438
Alignment:
Q  1 tgacataattcaatgtaatcatatatgtcggtgtctgacgtaatatgtatctggcactgtgacacatctaatccgtggagtatctgtacttgatag 96  Q
    |||||||||| ||||||||||||| |||||||||  ||| | |||||| || | || || ||||| ||||||||| ||||||| ||| ||| ||||    
T  40224533 tgacataatttaatgtaatcatatgtgtcggtgttggacatgatatgtttccgacattgggacacgtctaatccgaggagtatgtgtgcttcatag 40224438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 40150602 - 40150568
Alignment:
Q  5 ataattcaatgtaatcatatatgtcggtgtctgac 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  40150602 ataattcaatgtaatcatatgtgtcggtgtctgac 40150568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14332432 - 14332465
Alignment:
Q  1 tgacataattcaatgtaatcatatatgtcggtgt 34  Q
    ||||||||||||||||||||| ||||||||||||    
T  14332432 tgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12627849 - 12627813
Alignment:
Q  3 acataattcaatgtaatcatatatgtcggtgtctgac 39  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  12627849 acatatttcaatgtaatcatatatgtcgatgtctgac 12627813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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