View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10920_low_6 (Length: 320)

Name: NF10920_low_6
Description: NF10920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10920_low_6
NF10920_low_6
[»] chr2 (12 HSPs)
chr2 (165-313)||(31026471-31026624)
chr2 (1-113)||(31026622-31026735)
chr2 (4-38)||(16630798-16630832)
chr2 (1-34)||(12933755-12933788)
chr2 (1-38)||(18570975-18571012)
chr2 (1-46)||(30298466-30298511)
chr2 (1-38)||(40681985-40682022)
chr2 (1-48)||(10535778-10535825)
chr2 (1-35)||(30563415-30563449)
chr2 (1-54)||(13501097-13501150)
chr2 (3-36)||(18622420-18622453)
chr2 (1-38)||(19573981-19574018)
[»] chr5 (11 HSPs)
chr5 (1-46)||(11596474-11596519)
chr5 (1-44)||(28296325-28296368)
chr5 (1-54)||(2039868-2039921)
chr5 (1-54)||(38749582-38749635)
chr5 (1-35)||(18162061-18162095)
chr5 (4-46)||(23287371-23287413)
chr5 (1-46)||(16880766-16880811)
chr5 (1-34)||(17925191-17925224)
chr5 (1-46)||(39424636-39424681)
chr5 (1-38)||(43208293-43208330)
chr5 (1-72)||(30098294-30098366)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-55)||(99879-99933)
[»] chr3 (8 HSPs)
chr3 (1-55)||(41319329-41319383)
chr3 (3-36)||(9210846-9210879)
chr3 (8-53)||(25074777-25074822)
chr3 (1-33)||(1830351-1830383)
chr3 (1-49)||(21419474-21419522)
chr3 (1-33)||(30367638-30367670)
chr3 (5-41)||(34909868-34909904)
chr3 (1-49)||(47775717-47775765)
[»] chr1 (10 HSPs)
chr1 (1-43)||(19637766-19637808)
chr1 (1-46)||(7988470-7988515)
chr1 (1-35)||(11571591-11571625)
chr1 (1-55)||(26462664-26462718)
chr1 (1-35)||(40747792-40747826)
chr1 (1-34)||(2288186-2288219)
chr1 (1-34)||(3921674-3921707)
chr1 (6-35)||(29415754-29415783)
chr1 (1-38)||(42325563-42325600)
chr1 (2-38)||(11412788-11412824)
[»] chr7 (6 HSPs)
chr7 (1-38)||(38134425-38134462)
chr7 (1-35)||(12278841-12278875)
chr7 (1-35)||(17780103-17780137)
chr7 (1-35)||(44172909-44172943)
chr7 (2-46)||(17930458-17930502)
chr7 (1-33)||(18750884-18750916)
[»] chr4 (11 HSPs)
chr4 (1-38)||(18513260-18513297)
chr4 (1-44)||(5654610-5654653)
chr4 (1-35)||(10546154-10546188)
chr4 (4-38)||(14465316-14465350)
chr4 (1-55)||(34589725-34589779)
chr4 (6-55)||(7012052-7012101)
chr4 (1-46)||(34515893-34515938)
chr4 (4-72)||(25390908-25390976)
chr4 (1-33)||(41989572-41989604)
chr4 (3-35)||(43188618-43188650)
chr4 (6-34)||(53968553-53968581)
[»] chr8 (5 HSPs)
chr8 (6-38)||(33382043-33382075)
chr8 (4-46)||(9936809-9936851)
chr8 (1-34)||(34201065-34201098)
chr8 (1-54)||(42874509-42874562)
chr8 (1-33)||(29198498-29198530)
[»] scaffold0598 (1 HSPs)
scaffold0598 (1-55)||(8072-8126)
[»] chr6 (7 HSPs)
chr6 (1-35)||(2140500-2140534)
chr6 (1-55)||(5579640-5579694)
chr6 (8-54)||(21885779-21885825)
chr6 (1-43)||(32728365-32728407)
chr6 (1-54)||(9024195-9024248)
chr6 (1-46)||(17422274-17422319)
chr6 (1-37)||(10395452-10395488)
[»] scaffold0571 (1 HSPs)
scaffold0571 (3-35)||(7696-7728)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 165 - 313
Target Start/End: Complemental strand, 31026624 - 31026471
Alignment:
Q  165 ttacgttttgagctctttgaatccaaaacattaatttgactttgaaaaaacttttggtttctggctttgtgcagcagcagtcataaaacatata-----g 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     |    
T  31026624 ttacgttttgagctctttgaatccaaaacattaatttgactttgaaaaaacgtttggtttctggctttgtgcagcagcagtcataaaacatatagaactg 31026525  T
Q  260 cttttgactttggttgcacctctatggtggcgtggtagaattgttttcttctct 313  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31026524 cttttgactttggttgcacctctatggttgcgtggtagaattgttttcttctct 31026471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31026735 - 31026622
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtctaggtccgtgcttcataaatattggataaatatt-ttttcaaaaa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  31026735 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtctaggtccgtgcttcatagatattggataaatatttttttcaaaaa 31026636  T
Q  100 caactattgaatta 113  Q
    ||||||||||||||    
T  31026635 caactattgaatta 31026622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 16630832 - 16630798
Alignment:
Q  4 attgaattatgtcattttcttaaattattatcggt 38  Q
    |||||||||||||||||||||||||||||||||||    
T  16630832 attgaattatgtcattttcttaaattattatcggt 16630798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12933755 - 12933788
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  12933755 tacattgaattatgtcattttcttaaattattat 12933788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18571012 - 18570975
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18571012 tacattgaattatgtcattttctcaaattattatcggt 18570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30298466 - 30298511
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||    
T  30298466 tacactgaattatgtcattttattaaattattatcggtgtcgacgt 30298511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40682022 - 40681985
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40682022 tacattgaattatgtcattttctcaaattattatcggt 40681985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10535778 - 10535825
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtat 48  Q
    |||| |||||||||||||||||| |||||||||||||| ||| |||||    
T  10535778 tacactgaattatgtcattttctcaaattattatcggtgtcggcgtat 10535825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30563449 - 30563415
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  30563449 tacattgaattatgtcattttctcaaattattatc 30563415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13501097 - 13501150
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    ||||||||||||||||||||||||||| | |||||||  |||| || |||||||    
T  13501097 tacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgt 13501150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 18622453 - 18622420
Alignment:
Q  3 cattgaattatgtcattttcttaaattattatcg 36  Q
    |||| |||||||||||||||||||||||||||||    
T  18622453 catttaattatgtcattttcttaaattattatcg 18622420  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19574018 - 19573981
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  19574018 tacactgaattatgttattttcttaaattattatcggt 19573981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 11596474 - 11596519
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||    
T  11596474 tacattgaattatgtcattttctcaaattattatcggtatcgacgt 11596519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28296368 - 28296325
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgac 44  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  28296368 tacattgaattatgtcattttctcaaattattatcggtgtcgac 28296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2039868 - 2039921
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    |||||||||| |||||||||||| ||||||||| |||| ||||||| |||||||    
T  2039868 tacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtccgtgt 2039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38749582 - 38749635
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    ||||||||||||||||||||| | |||||||||||||| ||||| | |||||||    
T  38749582 tacattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgt 38749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18162095 - 18162061
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  18162095 tacactgaattatgtcattttcttaaattattatc 18162061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 23287371 - 23287413
Alignment:
Q  4 attgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||    
T  23287371 attgaattatgtcattttcctaaattattattggtgtcgacgt 23287413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 16880811 - 16880766
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    ||||||||| ||||||||||| |||||||||||| ||| |||||||    
T  16880811 tacattgaactatgtcatttttttaaattattatgggtatcgacgt 16880766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17925191 - 17925224
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattat 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  17925191 tacattgaattatgtgattttcttaaattattat 17925224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 39424681 - 39424636
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    |||||||||| |||||||||||| |||||||||| ||| |||||||    
T  39424681 tacattgaatcatgtcattttctcaaattattattggtgtcgacgt 39424636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43208293 - 43208330
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  43208293 tacattgaattatgtcattttctcaaattactatcggt 43208330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30098366 - 30098294
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtctag-gtccgtgcttcata 72  Q
    ||||||||||||||| ||||||| ||||||||| |||| ||| ||| || |||||  | ||||||||||||||    
T  30098366 tacattgaattatgtgattttctcaaattattaacggtttcgtcgtgtcagtgtccggtgtccgtgcttcata 30098294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 99933 - 99879
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    ||||||||||||||| ||||||| |||||||||||||| ||||| | ||||||||    
T  99933 tacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgtgtc 99879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41319329 - 41319383
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||    
T  41319329 tacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 9210846 - 9210879
Alignment:
Q  3 cattgaattatgtcattttcttaaattattatcg 36  Q
    ||||||||||||||||||||| ||||||||||||    
T  9210846 cattgaattatgtcattttctcaaattattatcg 9210879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 25074822 - 25074777
Alignment:
Q  8 aattatgtcattttcttaaattattatcggtctcgacgtatccgtg 53  Q
    |||||||||||||||| |||||||||||||| ||| ||| ||||||    
T  25074822 aattatgtcattttctcaaattattatcggtgtcggcgtgtccgtg 25074777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1830383 - 1830351
Alignment:
Q  1 tacattgaattatgtcattttcttaaattatta 33  Q
    |||| ||||||||||||||||||||||||||||    
T  1830383 tacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21419474 - 21419522
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatc 49  Q
    ||||||||||||| | ||||||||||||||||| |||| || |||||||    
T  21419474 tacattgaattatattattttcttaaattattaacggtatcaacgtatc 21419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30367638 - 30367670
Alignment:
Q  1 tacattgaattatgtcattttcttaaattatta 33  Q
    |||||| ||||||||||||||||||||||||||    
T  30367638 tacattcaattatgtcattttcttaaattatta 30367670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 34909904 - 34909868
Alignment:
Q  5 ttgaattatgtcattttcttaaattattatcggtctc 41  Q
    |||||||||||||| |||| |||||||||||||||||    
T  34909904 ttgaattatgtcatattctcaaattattatcggtctc 34909868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47775765 - 47775717
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatc 49  Q
    ||||||||||||| ||||||| ||| ||||||||| || ||||||||||    
T  47775765 tacattgaattatatcatttttttagattattatccgtgtcgacgtatc 47775717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19637808 - 19637766
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcga 43  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  19637808 tacattgaataatgtcattttcttaaattattatcggtgtcga 19637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 7988470 - 7988515
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||    
T  7988470 tacattgaattatgtcactttcttaaattattatcagtgtcgacgt 7988515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 11571625 - 11571591
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  11571625 tacattgaattatgtcattttctcaaattattatc 11571591  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26462664 - 26462718
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    |||||| |||||| ||||||||||||||||||||| || ||||||| || |||||    
T  26462664 tacattcaattatttcattttcttaaattattatcagtgtcgacgtgtcggtgtc 26462718  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40747792 - 40747826
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  40747792 tacattgaattatgtcattttctcaaattattatc 40747826  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2288186 - 2288219
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattat 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  2288186 tacattgaattatgtgattttcttaaattattat 2288219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3921707 - 3921674
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattat 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  3921707 tacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 29415783 - 29415754
Alignment:
Q  6 tgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||||||||||    
T  29415783 tgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42325600 - 42325563
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  42325600 tacactgaattatgtcattttctcaaattattatcggt 42325563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 11412788 - 11412824
Alignment:
Q  2 acattgaattatgtcattttcttaaattattatcggt 38  Q
    |||||||||||||||||||||| | ||||||||||||    
T  11412788 acattgaattatgtcattttctcatattattatcggt 11412824  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38134425 - 38134462
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  38134425 tacattgaattatgtcattttctcaaattattatcggt 38134462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 12278875 - 12278841
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    |||| ||||||||||||||||||||||||||||||    
T  12278875 tacactgaattatgtcattttcttaaattattatc 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 17780103 - 17780137
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  17780103 tacatagaattatgtcattttcttaaattattatc 17780137  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44172909 - 44172943
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  44172909 tacattgaattatgtcattttctcaaattattatc 44172943  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 17930502 - 17930458
Alignment:
Q  2 acattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    ||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  17930502 acattgaatgatgtcattttcttaaattagtattggtgtcgacgt 17930458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18750916 - 18750884
Alignment:
Q  1 tacattgaattatgtcattttcttaaattatta 33  Q
    |||||| ||||||||||||||||||||||||||    
T  18750916 tacattcaattatgtcattttcttaaattatta 18750884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18513260 - 18513297
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggt 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18513260 tacattgaattatgtcattttctcaaattattatcggt 18513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5654610 - 5654653
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgac 44  Q
    ||||||||||||||||||||||| ||||||||||| || |||||    
T  5654610 tacattgaattatgtcattttctcaaattattatcagtgtcgac 5654653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 10546188 - 10546154
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  10546188 tacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 14465316 - 14465350
Alignment:
Q  4 attgaattatgtcattttcttaaattattatcggt 38  Q
    |||||||||||||||||||| ||||||||||||||    
T  14465316 attgaattatgtcattttctcaaattattatcggt 14465350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34589725 - 34589779
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    ||||||||||||||||||||||| ||||| |||||||| || | || ||||||||    
T  34589725 tacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgtgtc 34589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 7012101 - 7012052
Alignment:
Q  6 tgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    |||||||||||||||||| |||||||||||||| ||| ||| || |||||    
T  7012101 tgaattatgtcattttctcaaattattatcggtgtcggcgtgtcggtgtc 7012052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 34515893 - 34515938
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    |||| ||||||||||||||||||| |||||||||| || |||||||    
T  34515893 tacactgaattatgtcattttcttgaattattatccgtgtcgacgt 34515938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 25390908 - 25390976
Alignment:
Q  4 attgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtctaggtccgtgcttcata 72  Q
    |||||||||||||||||||| |||||||||| ||| ||||  |||| | ||||  |||| |||||||||    
T  25390908 attgaattatgtcattttctaaaattattattggtatcgatttatcagcgtctgtgtccatgcttcata 25390976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41989604 - 41989572
Alignment:
Q  1 tacattgaattatgtcattttcttaaattatta 33  Q
    |||||| ||||||||||||||||||||||||||    
T  41989604 tacattcaattatgtcattttcttaaattatta 41989572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 43188650 - 43188618
Alignment:
Q  3 cattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||| |||||||||||    
T  43188650 cattgaattatgtcattttctcaaattattatc 43188618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 53968581 - 53968553
Alignment:
Q  6 tgaattatgtcattttcttaaattattat 34  Q
    |||||||||||||||||||||||||||||    
T  53968581 tgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 33382043 - 33382075
Alignment:
Q  6 tgaattatgtcattttcttaaattattatcggt 38  Q
    |||||||||||||||||||||||||||||||||    
T  33382043 tgaattatgtcattttcttaaattattatcggt 33382075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 9936851 - 9936809
Alignment:
Q  4 attgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  9936851 attgaattatatcattttcttaaattattatcgatgtcgacgt 9936809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34201065 - 34201098
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattat 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  34201065 tacattgaattatgtcattttctcaaattattat 34201098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42874562 - 42874509
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    ||||||||||||||||||||||| ||| | ||| |||| ||||||| |||||||    
T  42874562 tacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgt 42874509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29198498 - 29198530
Alignment:
Q  1 tacattgaattatgtcattttcttaaattatta 33  Q
    ||||||||||||||||||||||| |||||||||    
T  29198498 tacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8072 - 8126
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    |||| |||||||||||||||||| ||||||||||| || ||||||| || |||||    
T  8072 tacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtc 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2140500 - 2140534
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  2140500 tacattgaattatgtcattttctcaaattattatc 2140534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5579694 - 5579640
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgtc 55  Q
    ||||||||| ||||||||||||| ||| | |||||||| ||||||||| ||||||    
T  5579694 tacattgaactatgtcattttctcaaaattttatcggtgtcgacgtattcgtgtc 5579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 21885825 - 21885779
Alignment:
Q  8 aattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    |||||||| ||||| |||||||||||||||| || ||||||||||||    
T  21885825 aattatgttatttttttaaattattatcggtgtcaacgtatccgtgt 21885779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32728407 - 32728365
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcga 43  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||    
T  32728407 tacatagaattatgtcattttcttaatttattatcggtgtcga 32728365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9024195 - 9024248
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgtatccgtgt 54  Q
    ||||||||||||||||||||||| ||||||| ||  || ||||||| |||||||    
T  9024195 tacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17422274 - 17422319
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcggtctcgacgt 46  Q
    |||||| |||||| ||||||||| |||||||||||||| |||||||    
T  17422274 tacattcaattatatcattttctcaaattattatcggtgtcgacgt 17422319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10395488 - 10395452
Alignment:
Q  1 tacattgaattatgtcattttcttaaattattatcgg 37  Q
    |||||||||||||| |||||||| |||||||||||||    
T  10395488 tacattgaattatgccattttctgaaattattatcgg 10395452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7728 - 7696
Alignment:
Q  3 cattgaattatgtcattttcttaaattattatc 35  Q
    ||||||||||||||||||||| |||||||||||    
T  7728 cattgaattatgtcattttctcaaattattatc 7696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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