View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10920_low_7 (Length: 270)
Name: NF10920_low_7
Description: NF10920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10920_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 70 - 254
Target Start/End: Original strand, 1506547 - 1506731
Alignment:
| Q |
70 |
taaatatatgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatccagtaagttcaaattgcaattttgttaagtt |
169 |
Q |
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| T |
1506547 |
taaatatatgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatccagtaagttcaaattgcaattttgttaagtt |
1506646 |
T |
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| Q |
170 |
tttcttggttattattatttaaagttgattcatcctggttgcttttcattcttgcactttcttgaagtatttgagcagaggttat |
254 |
Q |
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| T |
1506647 |
tttcttggttattattatttaaagttgattcatcctagttgcttttcattcttgcactttcttgaagtatttgagcagaggttat |
1506731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 1501853 - 1501890
Alignment:
| Q |
209 |
tgcttttcattcttgcactttcttgaagtatttgagca |
246 |
Q |
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| T |
1501853 |
tgcttttcatttttgcacgttcttgaagtatttgagca |
1501890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 44142344 - 44142455
Alignment:
| Q |
32 |
tgtgcactcttcaaatttttagtgtttgaaactaattataaatatatgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacaga |
131 |
Q |
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| T |
44142344 |
tgtgcactcttcgaactcttagtatttgaaactaattttaaatatctgtactatgttccattttgcaacaacaaaagataattttattactctaaacaga |
44142443 |
T |
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| Q |
132 |
gtcaatccagta |
143 |
Q |
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| T |
44142444 |
gacaatccagta |
44142455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 44133967 - 44134027
Alignment:
| Q |
80 |
tactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatccagta |
143 |
Q |
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| T |
44133967 |
tactatgttttattttgcaacaacaaaag---attttattactctaaacagagacaatccagta |
44134027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 44129768 - 44129827
Alignment:
| Q |
78 |
tgtactatgttttgttttgcaacaacaaaagataattttattagtctaaacagagtcaatcca |
140 |
Q |
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| T |
44129768 |
tgtactatgttttattttgaaacaacaaaag---attttattactctaaacagaaacaatcca |
44129827 |
T |
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