View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10921_high_3 (Length: 339)
Name: NF10921_high_3
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 8341349 - 8341659
Alignment:
| Q |
19 |
atatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctcgttcttccctggtttaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8341349 |
atatcgtgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctcgttctttcctggtttaa |
8341448 |
T |
|
| Q |
119 |
ctcaaattctcttctccacttgattcagaaatgtcccttgctccaagctctcataattcagaatgacaaggtttcatttaatccaagcttaaattggtct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8341449 |
ctcaaattctcttctccacttgattcagaaatgtcccttgctccaacctctcataattcagaatgacaaggtttcatttaatccaagcttaatttggtct |
8341548 |
T |
|
| Q |
219 |
attaaactttgttgctaaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttatt |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341549 |
attaaactttgttgctaaatcagaagttgcatcttattgaacactacgctactgaatatacgacatgattaattcattattaagaatattgcatcttatt |
8341648 |
T |
|
| Q |
319 |
catgccctttg |
329 |
Q |
| |
|
||||||||||| |
|
|
| T |
8341649 |
catgccctttg |
8341659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 17478302 - 17478469
Alignment:
| Q |
25 |
tgtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctcgttcttccctggtttaactcaaa |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | ||||||||||||||||| |||||||| || || |||||| |||||| |||||||||||| || |
|
|
| T |
17478302 |
tgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctagagctcattcttctctggtttaactccaa |
17478401 |
T |
|
| Q |
125 |
ttctcttctccacttgattcagaaatgtcccttgctccaagctctcataattcagaatgacaaggttt |
192 |
Q |
| |
|
|||||| ||| |||| ||||||||||||| |||| |||| ||| ||||||||||| |||||||||| |
|
|
| T |
17478402 |
ttctctgctcagcttgcttcagaaatgtccgatgctgcaagttcttataattcagaacgacaaggttt |
17478469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 32849363 - 32849170
Alignment:
| Q |
26 |
gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctcgttcttccctggtttaactcaaat |
125 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | | |||||||||||||| ||||| ||||||| |||||| ||||||||||||||| | ||| |
|
|
| T |
32849363 |
gtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaat |
32849264 |
T |
|
| Q |
126 |
tctcttctccacttgattcagaaatgtcccttgctccaagctctcataattcagaatgacaaggtttcatttaatccaagcttaaattggtctat |
220 |
Q |
| |
|
| ||| ||| ||||| |||| ||||||| |||| |||| |||||| ||||| || |||||| || |||||||||| ||||| |||||||| |
|
|
| T |
32849263 |
tatctgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaagaacaagg-ttagtttaatccaaccttaatctggtctat |
32849170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 17478544 - 17478637
Alignment:
| Q |
236 |
aattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattcatgccctttg |
329 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||| |
|
|
| T |
17478544 |
aattagaagttttatcttattgcacaatacaccacttaatatataacatgattaattcattactatgaatattgcatcttattcaagtcctttg |
17478637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 4442005 - 4442155
Alignment:
| Q |
31 |
aacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgccttgagctcgttcttccctggtttaactcaaattctct |
130 |
Q |
| |
|
||||||||||||| |||||||| | ||| | ||||||||||||||| |||||| ||| | |||||| ||||||||||||||||||| |||| ||| |
|
|
| T |
4442005 |
aacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcatttagagctcattcttccctggtttaactccaattatct |
4442104 |
T |
|
| Q |
131 |
tctccacttgattcagaaatgtcccttgctccaagctctcataattcagaa |
181 |
Q |
| |
|
|| |||| |||| |||||||| |||| |||| ||||| ||||||||| |
|
|
| T |
4442105 |
gctttccttgcttcaaaaatgtcctgtgctacaagttctcaaaattcagaa |
4442155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 24952013 - 24951964
Alignment:
| Q |
142 |
ttcagaaatgtcccttgctccaagctctcataattcagaatgacaaggtt |
191 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
24952013 |
ttcagaaatgtcctatacttcaagctctcataattcataatgacaaggtt |
24951964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 8366506 - 8366420
Alignment:
| Q |
234 |
taaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattca |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | |||||||| || |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8366506 |
taaattagaagtagcatcttattgaacagtacaccactgaataaataacatgattaattcattcctatgaatattgcatcttattca |
8366420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 320
Target Start/End: Complemental strand, 8382505 - 8382421
Alignment:
| Q |
234 |
taaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattca |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||| ||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8382505 |
taaattagaagtagcatcttattgaacagtacaccacttaatatataacatgattaattcatta--atgaatattgcatcttattca |
8382421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University