View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10921_high_4 (Length: 325)
Name: NF10921_high_4
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 54839967 - 54839664
Alignment:
| Q |
1 |
tataaataatgttcacaagggccagtgccccatttgaactgctgtgataaataaatgccgaataatggaatcatgatacatttccttaggattatctgaa |
100 |
Q |
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| T |
54839967 |
tataaataatgttcacaagggccagtgccccatttgaactgttgtgataaataaatgccgaataatggaatcatgatacatttccttaggattatctgaa |
54839868 |
T |
|
| Q |
101 |
ctaggaaacggcctctagagaagattacaacttgaactgtacttgagttacatccatactaccattgtaatgaatctagagcctgttgatgaatctgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54839867 |
ctaggaaacggcctctagagaagattacaacttgaactgtacttgagttacatccatactaccattgtaatgaatctagagcctgttgatgaatctgttt |
54839768 |
T |
|
| Q |
201 |
gtcaccagccgccacaacattaaaacctgtcataggcaattcattaagacaacaatgcggccgaatgaagtaagagtaagtgacaaaatcattcatgact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54839767 |
gtcaccagccgccacaacattaaaacctgtcataggcaattcattaagacaacaatgcggccgaatgaagtaagagtaagtgacaaaatcattcatgact |
54839668 |
T |
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| Q |
301 |
ctta |
304 |
Q |
| |
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|||| |
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| T |
54839667 |
ctta |
54839664 |
T |
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