View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10921_low_10 (Length: 255)
Name: NF10921_low_10
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 37201141 - 37200934
Alignment:
| Q |
1 |
catgttgattatcaaatgtatatttcaatttaatccccaaaataacaaaaaagaaattgaaacttaaaatgtatttgcaatttgaatgacaataatcacc |
100 |
Q |
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| T |
37201141 |
catgttgattatcaaatgtatatttcaatttaatccccaaaataacaaaaaagaaattgaaacttaaaatatatttgcaatttgaatgacaataatcacc |
37201042 |
T |
|
| Q |
101 |
tatcccttatgctacctgtactttcaattccatgatcacacttacctgcaataaaacattcactttccgccattaacccaaaaaagaaaatcatttccgc |
200 |
Q |
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| T |
37201041 |
tatcccttatactacctgtactttcaattccatgatcacacttacctgcaataaaacattcactttccgccattaacccaaaaaagaaaatcatttccgc |
37200942 |
T |
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| Q |
201 |
gcccaccc |
208 |
Q |
| |
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|||||||| |
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| T |
37200941 |
gcccaccc |
37200934 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 8395464 - 8395533
Alignment:
| Q |
121 |
ctttcaattccatgatcacacttacctgcaataaaacattcactttccgccattaacccaaaaaagaaaatca |
193 |
Q |
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| T |
8395464 |
ctttcaattccatgatcactc--accagccataaa-cattcactttccgccattaacccaaaaaagaaaatca |
8395533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 26798523 - 26798485
Alignment:
| Q |
154 |
aaacattcactttccgccattaacccaaaaaagaaaatc |
192 |
Q |
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| T |
26798523 |
aaacattcactttccgccattaacccaaaaaagaaaatc |
26798485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 8537463 - 8537525
Alignment:
| Q |
126 |
aattccatgatcacacttacctgcaataaaacattcactttccgccattaacccaaaaaagaaaat |
191 |
Q |
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|||||||||||||| ||||| | |||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
8537463 |
aattccatgatcac--ttaccagtaataaa-cattcactttctgccattaacccaacaaagaaaat |
8537525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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