View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10921_low_11 (Length: 241)
Name: NF10921_low_11
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52267746 - 52267969
Alignment:
| Q |
1 |
ccaatttgacattatttgtaaaacttgttgaaatctaaaactaaagaataatataaaatttgaccttgaaagattttcaaaactgtgaaaaaacaacgag |
100 |
Q |
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| T |
52267746 |
ccaatttgacattatttgtaaaacttgttgaaatctaaaactaaagaataatataaaatttgaccttgaaagattttcaaaactgtgaaaaaacaacgag |
52267845 |
T |
|
| Q |
101 |
catttaatgccgctagtactgtttaagatgtggactcaaacccaaaaattccaggacttggttagtttttctaggaagaggaaaattggtagtaaaagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52267846 |
catttaatgccgctagtactgtttaagatgtggactcaaacccaataattccaggacttggttagtttttctaggaagaggaaaattggtagtaagagaa |
52267945 |
T |
|
| Q |
201 |
atactaacctctaaggtggcaggt |
224 |
Q |
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||||||||| ||||| |||||||| |
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| T |
52267946 |
atactaacccctaagctggcaggt |
52267969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 13746312 - 13746236
Alignment:
| Q |
148 |
attccaggacttggttagtttttctaggaagaggaaaattggtagtaaaagaaatactaacctctaaggtggcaggt |
224 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||| |
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| T |
13746312 |
attccaggacttggttagtttttctgggaagaggaaagttggtagtaagagaaatactaacctctaagttggcaggt |
13746236 |
T |
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