View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10921_low_12 (Length: 229)

Name: NF10921_low_12
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10921_low_12
NF10921_low_12
[»] chr5 (2 HSPs)
chr5 (20-208)||(1759372-1759557)
chr5 (152-208)||(1754206-1754261)
[»] chr4 (23 HSPs)
chr4 (145-208)||(27480021-27480084)
chr4 (146-208)||(27474012-27474074)
chr4 (143-208)||(27513731-27513796)
chr4 (145-208)||(27505659-27505722)
chr4 (145-208)||(27526069-27526132)
chr4 (123-208)||(27487103-27487188)
chr4 (146-206)||(27516567-27516627)
chr4 (145-208)||(27460598-27460661)
chr4 (145-208)||(27502092-27502155)
chr4 (145-208)||(27523360-27523423)
chr4 (158-208)||(27444764-27444814)
chr4 (146-208)||(27466941-27467003)
chr4 (61-119)||(27474102-27474160)
chr4 (145-208)||(27469580-27469643)
chr4 (48-119)||(27469683-27469754)
chr4 (158-208)||(27431118-27431168)
chr4 (147-208)||(27567375-27567436)
chr4 (160-208)||(27557609-27557657)
chr4 (145-208)||(27476807-27476870)
chr4 (158-205)||(27554432-27554479)
chr4 (158-208)||(27498535-27498585)
chr4 (145-202)||(27500295-27500352)
chr4 (159-208)||(27501437-27501486)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 1759557 - 1759372
Alignment:
Q  20 atcagagaagaattatagaaatatgaagttttacattcaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtc 119  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1759557 atcagagaagaattatagaaatatgaagttttacatccaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttctacaaaaattggtc 1759458  T
Q  120 ttttgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1759457 ttttgatattttcagaga---gctgattcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccac 1759372  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 1754206 - 1754261
Alignment:
Q  152 tcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||| ||||||||||||||||||||| || |||||| ||| |||| ||||||||||    
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccac 1754261  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 27480084 - 27480021
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||    
T  27480084 attcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccac 27480021  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 27474074 - 27474012
Alignment:
Q  146 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||    
T  27474074 ttcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccac 27474012  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 27513731 - 27513796
Alignment:
Q  143 tgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||| |||| ||||||||||    
T  27513731 tgattcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccac 27513796  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 27505659 - 27505722
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||| |||| ||||||||||    
T  27505659 attcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccac 27505722  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 27526069 - 27526132
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  27526069 attcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccac 27526132  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 27487188 - 27487103
Alignment:
Q  123 tgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||||||| ||| ||  | |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||    
T  27487188 tgatatcttcaaagaactaataattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccac 27487103  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 27516567 - 27516627
Alignment:
Q  146 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagacc 206  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||| |||| ||||||||    
T  27516567 ttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagacc 27516627  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 27460661 - 27460598
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||| | |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||    
T  27460661 attcaaattaagtgagaggtgatatccaagaaaatgtcttctctgcaaggaatggtgagaccac 27460598  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 27502092 - 27502155
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||| |||| || |||||||    
T  27502092 attcaatttaagtgagaggtgatatctaagaaaatgtcttctctgcaaggaatagttagaccac 27502155  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 27523360 - 27523423
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||    
T  27523360 attcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccac 27523423  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 27444764 - 27444814
Alignment:
Q  158 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  27444764 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccac 27444814  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 27467003 - 27466941
Alignment:
Q  146 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||  ||||||||| ||||||||||| |||||||||||| |||| ||||||||||    
T  27467003 ttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccac 27466941  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 27474160 - 27474102
Alignment:
Q  61 taacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtc 119  Q
    |||||| |||||| |||||||||||||||| ||||||||||||  ||||||||||||||    
T  27474160 taacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgctacaaaaattggtc 27474102  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 27469643 - 27469580
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||| |||||||| ||||||||||||||||  |||||||||||| |||| || |||||||    
T  27469643 attcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccac 27469580  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 27469754 - 27469683
Alignment:
Q  48 ttttacattcaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtc 119  Q
    |||||||| ||| | |||| |||||| ||||||||||||||||| |||||||||||  ||||||||| ||||    
T  27469754 ttttacatccaaattacaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctacaaaaatgggtc 27469683  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 27431118 - 27431168
Alignment:
Q  158 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||| |||| |||||||||||||||||||||| |||| ||||||||||    
T  27431118 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccac 27431168  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 27567436 - 27567375
Alignment:
Q  147 tcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||||||||||||||||  ||||||||| | ||||| |||||| |||| ||||||||||    
T  27567436 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccac 27567375  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 27557657 - 27557609
Alignment:
Q  160 gaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||||||||| |||||||||||  |||| ||||||||||    
T  27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccac 27557609  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 27476870 - 27476807
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||| |||||||| || ||||| ||||||| ||||||||||||| |||| || |||||||    
T  27476870 attcaatttaagtgagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccac 27476807  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 27554479 - 27554432
Alignment:
Q  158 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagac 205  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||||||    
T  27554479 gagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagac 27554432  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 27498585 - 27498535
Alignment:
Q  158 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    ||||||||||||||||||| | |||||||| |||| |||| ||||||||||    
T  27498585 gagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccac 27498535  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 27500295 - 27500352
Alignment:
Q  145 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtga 202  Q
    ||||||||||||  ||||||||  |||||||||| ||||||||||||| |||| ||||    
T  27500295 attcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtga 27500352  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 27501486 - 27501437
Alignment:
Q  159 agaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccac 208  Q
    |||||||||||||||||| | ||||||||| ||| |||| ||||||||||    
T  27501486 agaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccac 27501437  T

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