View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10921_low_13 (Length: 219)

Name: NF10921_low_13
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10921_low_13
NF10921_low_13
[»] chr2 (11 HSPs)
chr2 (17-201)||(38919197-38919381)
chr2 (29-143)||(23354594-23354708)
chr2 (29-143)||(23354937-23355051)
chr2 (36-118)||(11307971-11308053)
chr2 (33-117)||(25544488-25544572)
chr2 (19-91)||(37986772-37986844)
chr2 (32-156)||(10535685-10535812)
chr2 (32-79)||(24011042-24011089)
chr2 (32-82)||(12748690-12748740)
chr2 (32-79)||(6249205-6249252)
chr2 (25-79)||(34006997-34007051)
[»] chr8 (12 HSPs)
chr8 (21-114)||(13845229-13845322)
chr8 (21-133)||(13009445-13009557)
chr8 (33-82)||(39820436-39820485)
chr8 (19-154)||(44067509-44067644)
chr8 (23-82)||(35431143-35431202)
chr8 (19-83)||(3658140-3658204)
chr8 (32-82)||(1676718-1676768)
chr8 (84-161)||(36450689-36450766)
chr8 (91-156)||(39820482-39820547)
chr8 (61-156)||(3911145-3911241)
chr8 (19-83)||(18130534-18130598)
chr8 (124-156)||(34223021-34223053)
[»] chr5 (9 HSPs)
chr5 (33-133)||(43554528-43554622)
chr5 (21-82)||(39696002-39696063)
chr5 (33-91)||(25863211-25863269)
chr5 (25-91)||(26205754-26205820)
chr5 (19-75)||(42469214-42469270)
chr5 (23-72)||(2577193-2577242)
chr5 (91-154)||(7997108-7997172)
chr5 (34-82)||(31264446-31264494)
chr5 (85-156)||(32766872-32766943)
[»] chr4 (16 HSPs)
chr4 (33-158)||(31243474-31243600)
chr4 (29-132)||(6273947-6274050)
chr4 (19-152)||(20743210-20743344)
chr4 (32-82)||(3144655-3144705)
chr4 (32-156)||(17876161-17876285)
chr4 (19-118)||(7012059-7012158)
chr4 (19-156)||(24343500-24343632)
chr4 (32-156)||(18513175-18513294)
chr4 (31-156)||(19230241-19230363)
chr4 (23-143)||(32910548-32910669)
chr4 (35-75)||(49659533-49659573)
chr4 (78-136)||(10133749-10133808)
chr4 (84-156)||(34306744-34306816)
chr4 (85-156)||(16184879-16184950)
chr4 (86-153)||(46715416-46715484)
chr4 (85-156)||(53381530-53381602)
[»] chr7 (11 HSPs)
chr7 (33-97)||(29812652-29812716)
chr7 (19-156)||(4017729-4017860)
chr7 (21-160)||(7133208-7133342)
chr7 (32-151)||(25239637-25239756)
chr7 (32-82)||(23751906-23751956)
chr7 (19-132)||(43249986-43250099)
chr7 (21-82)||(22683758-22683819)
chr7 (19-118)||(23930212-23930305)
chr7 (107-156)||(40131939-40131989)
chr7 (91-156)||(23751953-23752018)
chr7 (19-91)||(38804549-38804621)
[»] scaffold0007 (1 HSPs)
scaffold0007 (19-154)||(225199-225334)
[»] chr6 (14 HSPs)
chr6 (19-82)||(6389736-6389799)
chr6 (32-91)||(17168457-17168516)
chr6 (84-161)||(24645528-24645605)
chr6 (32-82)||(34446571-34446621)
chr6 (84-156)||(4877990-4878061)
chr6 (19-75)||(19602191-19602247)
chr6 (34-82)||(24832596-24832644)
chr6 (19-91)||(26247419-26247491)
chr6 (32-82)||(12235522-12235572)
chr6 (35-88)||(2153884-2153937)
chr6 (32-81)||(6299518-6299567)
chr6 (32-81)||(6306328-6306377)
chr6 (118-154)||(5000557-5000593)
chr6 (118-162)||(17341615-17341659)
[»] chr3 (15 HSPs)
chr3 (19-156)||(14223788-14223919)
chr3 (19-82)||(15864826-15864889)
chr3 (24-91)||(25892458-25892525)
chr3 (32-118)||(52369781-52369867)
chr3 (42-156)||(4704220-4704335)
chr3 (32-157)||(21211294-21211414)
chr3 (29-118)||(27903635-27903718)
chr3 (29-82)||(34189430-34189483)
chr3 (107-158)||(27277778-27277829)
chr3 (34-158)||(17005546-17005670)
chr3 (29-91)||(25326429-25326491)
chr3 (33-82)||(3730168-3730217)
chr3 (34-157)||(8039763-8039886)
chr3 (91-154)||(24204983-24205047)
chr3 (32-88)||(25652028-25652084)
[»] chr1 (9 HSPs)
chr1 (32-157)||(42004881-42005000)
chr1 (21-82)||(6573984-6574045)
chr1 (85-156)||(9690213-9690285)
chr1 (32-92)||(11634117-11634177)
chr1 (32-91)||(6936394-6936453)
chr1 (21-91)||(40747767-40747837)
chr1 (107-156)||(34741916-34741965)
chr1 (120-156)||(32724044-32724080)
chr1 (108-156)||(48450550-48450598)
[»] scaffold0049 (1 HSPs)
scaffold0049 (26-155)||(56922-57052)
[»] scaffold0199 (1 HSPs)
scaffold0199 (32-82)||(1955-2005)
[»] scaffold0598 (1 HSPs)
scaffold0598 (25-98)||(8040-8113)
[»] scaffold0778 (1 HSPs)
scaffold0778 (24-91)||(4404-4471)
[»] scaffold0020 (1 HSPs)
scaffold0020 (107-158)||(135261-135313)


Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 38919197 - 38919381
Alignment:
Q  17 gaacacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38919197 gaacacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgatgcgtgtccgac 38919296  T
Q  117 acaggacacgtctaatctgaagagtgtttgtgcttcatagttacctgatggaagattttggaaggcattgtctgttggggcaaag 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38919297 acaggacacgtctaatctgaagagtgtttgtgcttcatagttacctgatggaagattttggaaggcattgtctgttggggcaaag 38919381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 23354708 - 23354594
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtc 128  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||  ||||||| |||||| || |||  ||||| ||||| ||||||| |    
T  23354708 acagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggggtcggacaccgaccggtgtctgacacgggacacgcc 23354609  T
Q  129 taatctgaagagtgt 143  Q
    ||||| || ||||||    
T  23354608 taatccgaggagtgt 23354594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 143
Target Start/End: Complemental strand, 23355051 - 23354937
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtc 128  Q
    ||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||  ||||||| || ||| || ||| |||||| ||||| ||||||| |    
T  23355051 acagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgacccgtgtctgacacgggacacgcc 23354952  T
Q  129 taatctgaagagtgt 143  Q
    ||||| || ||||||    
T  23354951 taatccgaggagtgt 23354937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 11308053 - 11307971
Alignment:
Q  36 ataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    ||||||||| ||||||  ||| || ||||||||||||||||||||||  |||||||||| ||| || ||||||||||||||||    
T  11308053 ataatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacac 11307971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 25544488 - 25544572
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca 117  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||  ||||| ||||| || ||  ||| ||||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgtcagtgtcagacaccaacgtgtgtccgaca 25544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 37986772 - 37986844
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||| |||| |||||||||||||||| |||||| |||| || ||||||||||||||| ||||||| |||||||    
T  37986772 acacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcgg 37986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 10535812 - 10535685
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtg--tcggtgtcggatactgacgcgtgtccgaca-caggacacgtc 128  Q
    ||||||||||||||||||||  ||| || |||||||||||| |||||||||| |||   | ||||| || ||| | | ||||| |||| ||||||||| |    
T  10535812 gataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtgacacagtgtccgacactaatgtgtgtctgacaccaggacacgcc 10535713  T
Q  129 taatctgaagagtgtttgtgcttcatag 156  Q
    ||||| || ||||||| |||||||||||    
T  10535712 taatccgaggagtgttcgtgcttcatag 10535685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 24011042 - 24011089
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcg 79  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcg 24011089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 12748690 - 12748740
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||| ||||    
T  12748690 gataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgt 12748740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 6249205 - 6249252
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcg 79  Q
    ||||||||||||||||||| ||||| || |||||| ||||||||||||    
T  6249205 gataataatttgagaaaatattataattcagtgtattcataggtgtcg 6249252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 34007051 - 34006997
Alignment:
Q  25 cgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcg 79  Q
    ||||| |||||||||||||||||| ||  ||| || |||||||||||||||||||    
T  34007051 cgatatagataataatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 13845229 - 13845322
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccg 114  Q
    ||||||| ||| ||||||||||||||||||| |||| ||||| |||||||||||||||||||  |||||||||||||| |||||||||||||||    
T  13845229 acaccgacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacactgacgcgtgtccg 13845322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 13009557 - 13009445
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacag 120  Q
    ||||||| || ||||||||||||||||||   |||| ||||||||||||||| |||||||||  |||| |||||| || || ||||| |||||||||| |    
T  13009557 acaccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgtccgacacgg 13009458  T
Q  121 gacacgtctaatc 133  Q
    |||||| ||||||    
T  13009457 gacacgcctaatc 13009445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 39820436 - 39820485
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 39820485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 44067509 - 44067644
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca- 117  Q
    |||| |||| || ||||||||||||||||||||  ||| |  |||||||| ||| |||||||||  ||||| |||||||| ||||| ||||||||||||     
T  44067509 acacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc-gtgtcggacactgatgcgtgtccgacac 44067607  T
Q  118 caggacacgtctaatctgaagagtgtttgtgcttcat 154  Q
    ||||||||| |||||  || ||||||  |||||||||    
T  44067608 caggacacgcctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 35431202 - 35431143
Alignment:
Q  23 accgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||| || ||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  35431202 accgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgt 35431143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 3658140 - 3658204
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgtt 83  Q
    ||||| ||| || |||||||||||||||||||  | ||||| |||||||||||||||||||||||    
T  3658140 acacatcgacacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgtt 3658204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 1676718 - 1676768
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||||||||    
T  1676718 gataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgt 1676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 36450766 - 36450689
Alignment:
Q  84 agtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtctaatctgaagagtgtttgtgcttcatagttacc 161  Q
    ||||| ||||||||| || |||||||||||||||| |||||||| |||||| || |||||| |||||||||||| ||||    
T  36450766 agtgtaggtgtcggacac-gacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatagctacc 36450689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 39820482 - 39820547
Alignment:
Q  91 gtgtcggatactgacgcgtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||| || |||||||||||||||| ||||||| |||||| ||  |||||  |||||||||||    
T  39820482 gtgtcggacaccgacgcgtgtccgacacgggacacgcctaatccgagaagtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 3911145 - 3911241
Alignment:
Q  61 agtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacag-gacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||| ||||||| |||||||||| |||||||| ||||| || ||||| ||||||| ||   |||||  ||||||| || ||||| ||||||||||||    
T  3911145 agtgaaatcataagtgtcgtgttggtgtcggtatcggacaccgacgcatgtccgatactcagacactcctaatctaaaaagtgtatgtgcttcatag 3911241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 18130598 - 18130534
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgtt 83  Q
    ||||||||| ||||||||||| ||||||||||| || | || ||||||| || ||||||| ||||    
T  18130598 acacaccgacacagataataagttgagaaaatgatacaattaagtgtaaccagaggtgtcatgtt 18130534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 34223021 - 34223053
Alignment:
Q  124 acgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||||||||| |||||||||||||||||||||    
T  34223021 acgtctaatctaaagagtgtttgtgcttcatag 34223053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 43554528 - 43554622
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtctaat 132  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||      |||||||||||||| || |||||||||||||||| ||||||| |||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgtc------gtgtcggtgtcggacaccgacgcgtgtccgacacgggacacgcctaat 43554621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 39696063 - 39696002
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||| || || ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  39696063 acaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 39696002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 25863211 - 25863269
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    ||||||||||||||||||| |||| || |||||||| ||| ||||||||| ||||||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgg 25863269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 26205820 - 26205754
Alignment:
Q  25 cgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||||| ||||| | ||||||||||||  ||| || ||||||||||||||||||||||| |||||||    
T  26205820 cgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcgg 26205754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 42469214 - 42469270
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggt 75  Q
    |||| |||| || ||||||||||||||||||||  ||| ||||||||||||||||||    
T  42469214 acacgccgacacggataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 2577242 - 2577193
Alignment:
Q  23 accgatacagataataatttgagaaaatgttatagtttagtgtaatcata 72  Q
    ||||| || ||||||||||||||||||||  ||| |||||||||||||||    
T  2577242 accgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 7997172 - 7997108
Alignment:
Q  91 gtgtcggatactgacgcgtgtccgaca-caggacacgtctaatctgaagagtgtttgtgcttcat 154  Q
    |||||||| |||||||||||||||||| ||||||||  |||||  ||  ||||||||||||||||    
T  7997172 gtgtcggacactgacgcgtgtccgacatcaggacacacctaattcgagaagtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 31264446 - 31264494
Alignment:
Q  34 taataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||||||||  ||| || |||||||||||| |||||||||    
T  31264446 taataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 31264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 32766943 - 32766872
Alignment:
Q  85 gtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||||||| | || ||| |||||||||||| |||| ||||||||||||| ||||||  |||||||||||    
T  32766943 gtgtcggtgtcgaaaac-gacacgtgtccgacaccaggatacgtctaatctgaggagtgtccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 158
Target Start/End: Complemental strand, 31243600 - 31243474
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtctaa 131  Q
    |||||||||||||||||||  ||| || |||||||||||||||||| |||  |||| ||||||||| || || |||||| ||||| ||||||||  ||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacaccgatgcgtgttcgacaccaggacacacctaa 31243501  T
Q  132 tctgaagagtgtttgtgcttcatagtt 158  Q
    | ||| ||||||||||| |||||||||    
T  31243500 tatgaggagtgtttgtggttcatagtt 31243474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Original strand, 6273947 - 6274050
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtc 128  Q
    ||||| ||||||||||||||||| |||| ||||||||||| ||||  |||||||  ||||||||||| || |  ||||| ||||||||||| |||||| |    
T  6273947 acagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccgacacaagacacgcc 6274046  T
Q  129 taat 132  Q
    ||||    
T  6274047 taat 6274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 20743344 - 20743210
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    |||| |||| || ||||||||||||||||||||  ||| || ||||||||||||||||| ||||  |||||| |||| || || ||| ||||||||||||    
T  20743344 acacgccgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgacac 20743245  T
Q  119 agg-acacgtctaatctgaagagtgtttgtgcttc 152  Q
     || |||| ||||||| || ||||||  |||||||    
T  20743244 cggaacacatctaatccgatgagtgtccgtgcttc 20743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 3144705 - 3144655
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||||||    
T  3144705 gataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgt 3144655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 17876161 - 17876285
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtcta 130  Q
    |||| |||||| ||||||||  ||| ||||||||||||||| ||| ||||| |||||| ||||| || || ||||| ||||||||| ||||||||  |||    
T  17876161 gatactaattttagaaaatgacataatttagtgtaatcatatgtgccgtgtcagtgtc-gtgtcagacaccgacgcttgtccgacaccaggacacaccta 17876259  T
Q  131 atctgaagagtgtttgtgcttcatag 156  Q
    |||  | |||||| ||||||||||||    
T  17876260 atccaaggagtgtctgtgcttcatag 17876285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 7012059 - 7012158
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtc-gtgttagtgtcggtgtcggatactgacgcgtgtccgaca 117  Q
    |||| |||| || ||||||||||||||||||||  ||| || ||||| ||||||||| || ||||| |||||||||||||| || ||||||| |||||||    
T  7012059 acacgccgacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgtt-gtgtcggtgtcggacaccgacgcgtatccgaca 7012157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 24343500 - 24343632
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca- 117  Q
    |||| |||| || |||||||||||||||||||   ||| || |||||||| |||||||||||||      ||||||| || || |||||||||||||||     
T  24343500 acacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgt------cggtgtccgacaccgacgcgtgtccgacac 24343593  T
Q  118 caggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    | ||||||| ||| ||||| ||||||  |||||||||||    
T  24343594 cgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 18513294 - 18513175
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtcta 130  Q
    ||||||||||||||||||||  ||| || | |||||||||| |||||     ||||| | ||||||| || |||| ||||||||||| |||||||| |||    
T  18513294 gataataatttgagaaaatgacataattcaatgtaatcatatgtgtc-----agtgttg-tgtcggacaccgacgtgtgtccgacaccaggacacgccta 18513201  T
Q  131 atctgaagagtgtttgtgcttcatag 156  Q
    |||||| ||||||  |||||||||||    
T  18513200 atctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 19230363 - 19230241
Alignment:
Q  31 agataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgac-acaggacacgtct 129  Q
    ||||||||||||||||||||   ||| || | |||||| |||||||||||    ||||||||||| || || || |||||| |||| ||||||||| |||    
T  19230363 agataataatttgagaaaataacataattcaatgtaattataggtgtcgt----gtgtcggtgtcagacacggatgcgtgttcgacaacaggacacatct 19230268  T
Q  130 aatctgaagagtgtttgtgcttcatag 156  Q
    |||| |||||||||  || ||||||||    
T  19230267 aatccgaagagtgtccgtacttcatag 19230241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 32910548 - 32910669
Alignment:
Q  23 accgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-cagg 121  Q
    ||||| || ||||||||||||||||||||  ||| || |||||||| || |||||  |||  || ||||| | ||| |||||||||||||||||| || |    
T  32910548 accgacacggataataatttgagaaaatgacataattcagtgtaattatgggtgttatgtcggtatcggtattggacactgacgcgtgtccgacaccatg 32910647  T
Q  122 acacgtctaatctgaagagtgt 143  Q
    ||||| |||||| || ||||||    
T  32910648 acacgcctaatccgaggagtgt 32910669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  35 aataatttgagaaaatgttatagtttagtgtaatcataggt 75  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 10133749 - 10133808
Alignment:
Q  78 cgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtctaatctga 136  Q
    |||||| ||||||||||| || |||||||||||||||||| ||||||||  |||||||||    
T  10133749 cgtgttggtgtcggtgtcagacactgacgcgtgtccgacaccaggacacacctaatctga 10133808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 156
Target Start/End: Complemental strand, 34306816 - 34306744
Alignment:
Q  84 agtgtcggtgtcggatactgacgcgtgtccgacacag-gacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||||||||||||| || ||| |||||||||||| | |||||| ||||||||| || |||| |||||||||||    
T  34306816 agtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 16184879 - 16184950
Alignment:
Q  85 gtgtcggtgtcggatactgacgcgtgtccgacacagg-acacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||||||| |||| || || |||||||||| || ||||| |||||| || |||||||||||||||||||    
T  16184879 gtgtcggtgtcgcatac-gatgcctgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 46715484 - 46715416
Alignment:
Q  86 tgtcggtgtcggatactgacgcgtgtccgacacagg-acacgtctaatctgaagagtgtttgtgcttca 153  Q
    |||| |||||||| |||| |||||||||||||| || ||| |||||||| || ||||||| ||||||||    
T  46715484 tgtctgtgtcggacactgccgcgtgtccgacaccggcacatgtctaatccgaggagtgttcgtgcttca 46715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 53381602 - 53381530
Alignment:
Q  85 gtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||||||||| |||||||||| ||||||| | ||||||  |||||| || ||||||  |||||||||||    
T  53381602 gtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 29812716 - 29812652
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcgg 97  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggtgtcgg 29812652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 4017860 - 4017729
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    |||| |||| || |||||||||||||||||| | |||| ||||||||||||||| ||||||||||      ||||||||| || |||| ||||| |||||    
T  4017860 acacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgtt------ggtgtcggacaccgacgtgtgtctgacac 4017767  T
Q  119 aggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
     | ||||| ||||||| || |||||| |||||||||||    
T  4017766 ggaacacgcctaatctaaaaagtgttcgtgcttcatag 4017729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 7133342 - 7133208
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac-a 119  Q
    ||||||| |||||| ||||||||||||||||  ||| || ||||||||||||||||    ||  |||||||||||||| || ||||||||||||||||      
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtg----gt--gtgtcggtgtcggacaccgacgcgtgtccgacactg 7133249  T
Q  120 ggacacgtctaatctgaagagtgtttgtgcttcatagttac 160  Q
    ||||||  ||||||||| ||| ||  |||||||||||||||    
T  7133248 ggacacacctaatctgaggagcgtccgtgcttcatagttac 7133208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 25239756 - 25239637
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtcta 130  Q
    ||||||||||||||||||| |||||  | |||||||| ||||||||| |||| |||||||||||||| | ||||| |||||||||| ||||||||  |||    
T  25239756 gataataatttgagaaaattttataactcagtgtaattataggtgtcatgtt-gtgtcggtgtcggacattgacgtgtgtccgacaccaggacaccccta 25239658  T
Q  131 atctgaagagtgtttgtgctt 151  Q
    ||  ||| || ||||||||||    
T  25239657 attcgaaaagcgtttgtgctt 25239637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 23751906 - 23751956
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  23751906 gataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgt 23751956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 43249986 - 43250099
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca- 117  Q
    |||| |||| || ||||||||||||||||||||  ||| |  |||||||| ||| |||||||||  ||||| | |||||| ||||||||||||||||||     
T  43249986 acacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtc-gcgtcggacactgacgcgtgtccgacac 43250084  T
Q  118 caggacacgtctaat 132  Q
    ||||||||| |||||    
T  43250085 caggacacgcctaat 43250099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 22683819 - 22683758
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||| || |||||||||||||||| ||| |||| || |||| |||||||||||||||||    
T  22683819 acaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 23930212 - 23930305
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    ||||| ||| || |||| |||||||||||||||  ||| || ||||||||||||||||      | ||||||||||||||||| || |||||||||||||    
T  23930212 acacatcgacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtg------ttgtgtcggtgtcggataccgatgcgtgtccgacac 23930305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 40131989 - 40131939
Alignment:
Q  107 cgtgtccgacacagg-acacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||||||||||||| |||||||||||| || |||||| ||||||||||||    
T  40131989 cgtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcatag 40131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 23751953 - 23752018
Alignment:
Q  91 gtgtcggatactgacgcgtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||| || |||||||||| ||||| ||||||| |||||| ||  ||||| ||||||||||||    
T  23751953 gtgtcggacaccgacgcgtgtcagacacgggacacgcctaatccgataagtgtctgtgcttcatag 23752018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 38804621 - 38804549
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||| |||| || ||||||||||| ||||||||  ||| |  || |||||||||||||||||||| |||||||    
T  38804621 acacgccgacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcgg 38804549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 225334 - 225199
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca- 117  Q
    |||| |||| |||||||||||||||||||||||  ||| |  | |||||| ||| |||||||||| ||||| |||||||| |||||||||||| |||||     
T  225334 acacgccgacacagataataatttgagaaaatgacataatacaatgtaattataagtgtcgtgttggtgtc-gtgtcggacactgacgcgtgttcgacac 225236  T
Q  118 caggacacgtctaatctgaagagtgtttgtgcttcat 154  Q
    ||||||||| |||||  || ||||||  |||||||||    
T  225235 caggacacgcctaattcgaggagtgtccgtgcttcat 225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 6389736 - 6389799
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||| |||| || |||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  6389736 acacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgt 6389799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 17168516 - 17168457
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||||||||||||||||||| |||| ||||||||||| |||||||||||||  |||||||    
T  17168516 gataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcgg 17168457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 24645528 - 24645605
Alignment:
Q  84 agtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtctaatctgaagagtgtttgtgcttcatagttacc 161  Q
    |||||||||||| || || ||| |||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||    
T  24645528 agtgtcggtgtcagacac-gacacgtgtccgacaccaagacacgtctaatccgaagagtgtctgtgcttcatagttacc 24645605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 34446571 - 34446621
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||||||||||  ||| || ||||||||||||||||||||||    
T  34446571 gataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 34446621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 4877990 - 4878061
Alignment:
Q  84 agtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||||||||||||| || ||| | |||||||||||||||||| |||||| || ||||||  |||||||||||    
T  4877990 agtgtcggtgtcggacac-gacacatgtccgacacaggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 19602247 - 19602191
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggt 75  Q
    ||||||| | || |||||||||||||||||||| |||| || |||||||||||||||    
T  19602247 acacaccaacactgataataatttgagaaaatgatataattcagtgtaatcataggt 19602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 24832596 - 24832644
Alignment:
Q  34 taataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||||||||||||| ||||| ||||||||||| ||| |||||||||    
T  24832596 taataatttgagaaaatcttataatttagtgtaattatatgtgtcgtgt 24832644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 26247419 - 26247491
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||||| ||||| ||||||||||| ||||||||  ||| |||||| ||||||||||| ||||||  |||||||    
T  26247419 acacacagatacggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcgg 26247491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 12235572 - 12235522
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||||||||| |||||||||  ||| || ||||||||||||||||||||||    
T  12235572 gataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgt 12235522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 2153937 - 2153884
Alignment:
Q  35 aataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgt 88  Q
    |||||||| |||||||| |||| ||||||||||| |||||||||| ||| ||||    
T  2153937 aataatttaagaaaatgatataatttagtgtaattataggtgtcgcgttggtgt 2153884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 6299518 - 6299567
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtg 81  Q
    |||||||||||||||||||| |||| || | |||||| ||||||||||||    
T  6299518 gataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6299567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 6306328 - 6306377
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtg 81  Q
    |||||||||||||||||||| |||| || | |||||| ||||||||||||    
T  6306328 gataataatttgagaaaatgatataattcaatgtaatgataggtgtcgtg 6306377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 5000593 - 5000557
Alignment:
Q  118 caggacacgtctaatctgaagagtgtttgtgcttcat 154  Q
    |||||||||||||||| |||||||||| |||||||||    
T  5000593 caggacacgtctaatccgaagagtgttcgtgcttcat 5000557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 17341659 - 17341615
Alignment:
Q  118 caggacacgtctaatctgaagagtgtttgtgcttcatagttacct 162  Q
    ||||||||| |||||| || |||||||||||||||||| ||||||    
T  17341659 caggacacgcctaatccgaggagtgtttgtgcttcataattacct 17341615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 14223919 - 14223788
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    |||| |||| ||||||||||||||||||||| | |||| ||||||||| ||||| |||||      ||||||||||| || || ||| |||||||||||     
T  14223919 acacgccgacacagataataatttgagaaaacgatataatttagtgtattcataagtgtc------gtgtcggtgtccgacaccgacacgtgtccgacat 14223826  T
Q  119 aggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
     ||||||| ||||||||| |||| | ||||||| ||||    
T  14223825 gggacacgcctaatctgaggagtttctgtgctttatag 14223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 15864826 - 15864889
Alignment:
Q  19 acacaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||| |||| || ||||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  15864826 acacgccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgt 15864889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 25892458 - 25892525
Alignment:
Q  24 ccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||| ||| |||||||||| |||||||| |||| || |||||||||||||||||||||| ||||||||    
T  25892458 ccgaaacaaataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcgg 25892525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 52369781 - 52369867
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    |||||||||||||||||||   ||| || | ||||||||||||||||||||  |||||||| ||||| || ||||||||||| ||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacac 52369867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 4704335 - 4704220
Alignment:
Q  42 tgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtctaatctgaagag 140  Q
    ||||||||||  ||| || |||||||||||| ||| | |  | ||||||||||| || ||| |||||||||| |||| ||||||| |||||||||| ||     
T  4704335 tgagaaaatgacataattcagtgtaatcatatgtgccattgtcgtgtcggtgtctgacactaacgcgtgtccaacactaggacacatctaatctgaggaa 4704236  T
Q  141 tgtttgtgcttcatag 156  Q
    ||||||||| ||||||    
T  4704235 tgtttgtgcgtcatag 4704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 157
Target Start/End: Original strand, 21211294 - 21211414
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacagg-acacgtcta 130  Q
    |||||||||||||||||||   |||||| |||||||| || ||||||||||      ||||||  || || |||||||||||||||| || ||||  |||    
T  21211294 gataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgt------cggtgttcgacaccgacgcgtgtccgacactgggacactccta 21211387  T
Q  131 atctgaagagtgtttgtgcttcatagt 157  Q
    ||| || ||||||||||||||||||||    
T  21211388 atccgaggagtgtttgtgcttcatagt 21211414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 27903635 - 27903718
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacac 118  Q
    ||||||||||||||||||||| | |||| |||| |||||||||| |||      | ||||||||||||||||| |||||||||| |||||    
T  27903635 acagataataatttgagaaaacgatataatttaatgtaatcataagtg------ttgtgtcggtgtcggataccgacgcgtgtctgacac 27903718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 34189430 - 34189483
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||||||||||||||||||||||  ||| || ||||||||| ||||||||||||    
T  34189430 acagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 27277829 - 27277778
Alignment:
Q  107 cgtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatagtt 158  Q
    |||||||||||| ||||| |||||||| || |||||| ||||||||||||||    
T  27277829 cgtgtccgacacgggacatgtctaatccgaggagtgtatgtgcttcatagtt 27277778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 17005670 - 17005546
Alignment:
Q  34 taataatttgagaaaatgttatagtttagtgtaatcataggtgtcg-tgttagtgtcggtgtcggatactgacgcgtgtccgacac-aggacacgtctaa 131  Q
    ||||||||||| |||||  |||| || |||||||| ||| |||||| |||| |||| |||||| || | | || |||||| ||||| ||||||| |||||    
T  17005670 taataatttgataaaatcatataattcagtgtaattataagtgtcggtgtt-gtgttggtgtcagaca-taacacgtgtctgacaccaggacacctctaa 17005573  T
Q  132 tctgaagagtgtttgtgcttcatagtt 158  Q
    || || |||||||||||||||||||||    
T  17005572 tccgaggagtgtttgtgcttcatagtt 17005546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 25326429 - 25326491
Alignment:
Q  29 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||||||||||||| | |||||  |||| ||||||||||| |||| ||||||||| |||||||    
T  25326429 acagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcgg 25326491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 3730217 - 3730168
Alignment:
Q  33 ataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||||||||||||| ||||  ||| || ||||||||||||||||||||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgtgt 3730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 157
Target Start/End: Complemental strand, 8039886 - 8039763
Alignment:
Q  34 taataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgaca-caggacacgtctaat 132  Q
    |||||||||||||||||  |||| || |||||||| ||| ||||||   | |||||||||||||| | |||  | ||||||||| | |||||||  ||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca-tgagacatgtccgacaccgggacacgcttaat 8039788  T
Q  133 ctgaagagtgtttgtgcttcatagt 157  Q
    | ||||||| | |||||||||||||    
T  8039787 ccgaagagtatctgtgcttcatagt 8039763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 24205047 - 24204983
Alignment:
Q  91 gtgtcggatactgacgcgtgtccgaca-caggacacgtctaatctgaagagtgtttgtgcttcat 154  Q
    |||||||| |||||||||||||||||| ||||||||| |||||  || ||||||  |||||||||    
T  24205047 gtgtcggacactgacgcgtgtccgacaccaggacacgcctaattcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 25652084 - 25652028
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgt 88  Q
    |||||||||||||||||||| |||| || |||||| | |||||||| |||| |||||    
T  25652084 gataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgt 25652028  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 157
Target Start/End: Complemental strand, 42005000 - 42004881
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgacgcgtgtccgacacaggacacgtctaa 131  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||      | |||||||||||||| || ||||| ||||||||||   ||||| ||||    
T  42005000 gataataatttgagaaaatgacataatttagtgtaatcataggtg------ttgtgtcggtgtcggacaccgacgcatgtccgacactaaacacgcctaa 42004907  T
Q  132 tctgaagagtgtttgtgcttcatagt 157  Q
    |  |||||||||  ||||||||||||    
T  42004906 ttcgaagagtgtccgtgcttcatagt 42004881  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 6573984 - 6574045
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    ||||||| || ||| ||||||||||| |||| |||| |||||||||||||||||||| ||||    
T  6573984 acaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgt 6574045  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 9690285 - 9690213
Alignment:
Q  85 gtgtcggtgtcggatactgacgcgtgtccgacacagg-acacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||||| |||||  |||||| |||||||||||| || ||||| |||||| | ||||||||||||||||||||    
T  9690285 gtgtcggcgtcggccactgacacgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcatag 9690213  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 11634177 - 11634117
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggt 92  Q
    ||||||||||||||||||    ||| |||| |||||||||||||||||||| |||||||||    
T  11634177 gataataatttgagaaaacaacataatttaatgtaatcataggtgtcgtgtgagtgtcggt 11634117  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 6936453 - 6936394
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    ||||||||| ||||||||||  ||| || ||||||||||||||||||||||  |||||||    
T  6936453 gataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcgg 6936394  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 40747837 - 40747767
Alignment:
Q  21 acaccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    ||||||| || ||||||||||||||||||||  ||| || | |||||| ||||||||| |||| |||||||    
T  40747837 acaccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcgg 40747767  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 34741916 - 34741965
Alignment:
Q  107 cgtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||||||| ||||||| |||||| |||||||||  |||||||||||    
T  34741916 cgtgtccgacacgggacacgcctaatccgaagagtgtccgtgcttcatag 34741965  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Complemental strand, 32724080 - 32724044
Alignment:
Q  120 ggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  32724080 ggacacgtttaatctgaagagtctttgtgcttcatag 32724044  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 48450598 - 48450550
Alignment:
Q  108 gtgtccgacacaggacacgtctaatctgaagagtgtttgtgcttcatag 156  Q
    ||||| |||||||||||||||||||| || ||||||  |||||||||||    
T  48450598 gtgtcggacacaggacacgtctaatccgaggagtgtccgtgcttcatag 48450550  T

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Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 56922 - 57052
Alignment:
Q  26 gatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtc-gtgttagtgtcggtgtcggatactgacgcgtgtccgacacagg-ac 123  Q
    |||| |||| |||||||||||||||| |||| || |||||||||||| ||||| ||| | ||||||||| |||| ||  | ||||||| ||||| || |     
T  56922 gataaagattataatttgagaaaatgatataattcagtgtaatcataagtgtcagtg-tcgtgtcggtgacggagaccaatgcgtgtctgacaccggaaa 57020  T
Q  124 acgtctaatctgaagagtgtttgtgcttcata 155  Q
    ||  ||||||||| ||||||||||||||||||    
T  57021 acacctaatctgaggagtgtttgtgcttcata 57052  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 1955 - 2005
Alignment:
Q  32 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgt 82  Q
    |||||||||||| |||||||  ||| |||||||||||||||||||||||||    
T  1955 gataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgt 2005  T

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Target: scaffold0598 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 8113 - 8040
Alignment:
Q  25 cgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcgga 98  Q
    |||||| ||||||||||||||||||||  ||| || ||||||| ||||||| ||||||  || |||||||||||    
T  8113 cgatacggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggtttcggtgtcgga 8040  T

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Target: scaffold0778 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 4404 - 4471
Alignment:
Q  24 ccgatacagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcgg 91  Q
    |||| |||||||||||||| |||| ||| |||| || ||||| ||||||| ||||||| |||||||||    
T  4404 ccgaaacagataataatttaagaatatgatataattcagtgtcatcatagatgtcgtgctagtgtcgg 4471  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 135313 - 135261
Alignment:
Q  107 cgtgtccgacac-aggacacgtctaatctgaagagtgtttgtgcttcatagtt 158  Q
    |||||||||||| |||||||| ||||||||| | ||||| |||||||||||||    
T  135313 cgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatagtt 135261  T

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