View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10921_low_3 (Length: 370)

Name: NF10921_low_3
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10921_low_3
NF10921_low_3
[»] chr8 (9 HSPs)
chr8 (122-370)||(2551125-2551373)
chr8 (168-370)||(2556735-2556937)
chr8 (171-370)||(2566561-2566760)
chr8 (184-364)||(2543658-2543838)
chr8 (171-367)||(2534211-2534407)
chr8 (184-370)||(1831841-1832027)
chr8 (184-370)||(1866284-1866470)
chr8 (246-307)||(2546828-2546889)
chr8 (18-54)||(2558615-2558651)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 122 - 370
Target Start/End: Complemental strand, 2551373 - 2551125
Alignment:
Q  122 aataaaaattccgtgactatttgattataacttgattaatgataacaacattaattagataggcaagggacaattggaatagtatttctaactattccat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2551373 aataaaaattccgtgactatttgattataacttgattaatgataacaacattaattagataggcaagggacaattggaatagtatttctaactattccat 2551274  T
Q  222 gagcatttctacaaaaagaggaagtcttctttcctggttgagcagatacaatgttattttgatctaatagaatcttaaaacaaccagatgaactacactt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2551273 gagcatttctacaaaaagaggaagtcttctttcctggttgagcagatacaatgttattttgatctaatagaatcttaaaacaaccagaagaactacactt 2551174  T
Q  322 taaatcaattgctatatcactagaagaagttccggtaaatcctcgatat 370  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2551173 taaatcaattgctatatcactataagaagttccggtaaatcctcgatat 2551125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 168 - 370
Target Start/End: Complemental strand, 2556937 - 2556735
Alignment:
Q  168 aacattaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcaga 267  Q
    |||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| | |||||| | ||||||| ||||| ||     
T  2556937 aacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcatttttcctgcttgagtagc 2556838  T
Q  268 tacaatgttattttgatctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcga 367  Q
    |||||||||||||||||| |||||||| |  ||||||||||| || ||||| ||||||| ||  ||||| |  |||| ||||||||||||||||||||||    
T  2556837 tacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcga 2556738  T
Q  368 tat 370  Q
    |||    
T  2556737 tat 2556735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 171 - 370
Target Start/End: Complemental strand, 2566760 - 2566561
Alignment:
Q  171 attaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagatac 270  Q
    ||||| |||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||| ||||| || |||    
T  2566760 attaactagataggcaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcttttttcctgcttgagtagctac 2566661  T
Q  271 aatgttattttgatctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcgatat 370  Q
    ||||||||||||||| |||||||| || ||||||||||  || ||||| ||||||| ||  ||||| |  |||| |||||||||  ||||||||||||||    
T  2566660 aatgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgatat 2566561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 184 - 364
Target Start/End: Complemental strand, 2543838 - 2543658
Alignment:
Q  184 gcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagatacaatgttattttga 283  Q
    |||||||||| |||||| |||||||||| |  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||| |||||||| |||||     
T  2543838 gcaagggacatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccttctttcctggttgagcagaaacaatgttgttttgt 2543739  T
Q  284 tctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcct 364  Q
    || |||| ||| | | |||||||||| || ||||| ||||| | ||| ||||   | |||| |||||||||||||||||||    
T  2543738 tccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcct 2543658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 171 - 367
Target Start/End: Complemental strand, 2534407 - 2534211
Alignment:
Q  171 attaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagatac 270  Q
    ||||||| |||| |||||||| | |||||| |||||||||| |  ||||||| |||||| |||||||||| |||| |  |||| ||||||||||||| ||    
T  2534407 attaatttgataagcaagggatatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccgccttttctggttgagcagaaac 2534308  T
Q  271 aatgttattttgatctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcga 367  Q
    |||||| ||||| || |||| ||| | | |||||||||| || ||||| ||||| | ||| ||||   | |||| ||||||||||||||||||||||    
T  2534307 aatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcga 2534211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 370
Target Start/End: Complemental strand, 1832027 - 1831841
Alignment:
Q  184 gcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagatacaatgttattttga 283  Q
    ||||| |||| |||||||||||||| || |  |||||||||||||| ||||   |||  |||| ||  |||||||||||||||| ||||| || ||||||    
T  1832027 gcaagtgacacttggaatagtatttgtagcggttccatgagcatttttacactgagaataagtttttgttcctggttgagcagagacaattttgttttga 1831928  T
Q  284 tctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcgatat 370  Q
    || ||| |||| ||    ||||||||||| | ||| ||||| | ||| ||||  ||  |||  |||||||| |||||||||||||||    
T  1831927 tccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatat 1831841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 370
Target Start/End: Complemental strand, 1866470 - 1866284
Alignment:
Q  184 gcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagatacaatgttattttga 283  Q
    ||||| |||| |||||||||||||| || |  |||||||||||||| ||||   |||  |||| ||  |||||||||||||||| ||||| || ||||||    
T  1866470 gcaagtgacacttggaatagtatttgtagcggttccatgagcatttttacactgagaataagtttttgttcctggttgagcagagacaattttgttttga 1866371  T
Q  284 tctaatagaatcttaaaacaaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcgatat 370  Q
    || ||| |||| ||    ||||||||||| | ||| ||||| | ||| ||||  ||  |||  |||||||| |||||||||||||||    
T  1866370 tccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatat 1866284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 2546889 - 2546828
Alignment:
Q  246 tcttctttcctggttgagcagatacaatgttattttgatctaatagaatcttaaaacaacca 307  Q
    |||||||||||| ||||| ||| ||||||| ||||||||| |||||||| || |||||||||    
T  2546889 tcttctttcctgattgagaagagacaatgtcattttgatccaatagaatgttcaaacaacca 2546828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2558651 - 2558615
Alignment:
Q  18 ccaccaatggattttgtatctaccataaccacctatt 54  Q
    |||||||||| ||||||||||||||||||||||||||    
T  2558651 ccaccaatgggttttgtatctaccataaccacctatt 2558615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University