View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10921_low_4 (Length: 360)
Name: NF10921_low_4
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 36717034 - 36716691
Alignment:
| Q |
1 |
tggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctccttctctcaatcgcctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717034 |
tggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctccttctctcaatcgcctaa |
36716935 |
T |
|
| Q |
101 |
acacaatattaacaacactaatttagttcatattcaaattaataagatggaactaaacatacagaaaattcatcagaacattgacaacgatgacttaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36716934 |
acacaatattaacaacactaatttagttcatattcaaattaataagatggaactaaacatacagaaaattcatcagaactttgacaacgatgacttaatt |
36716835 |
T |
|
| Q |
201 |
tatataccattcaaattaaactcaacaaacagagaattatcatcacataacaagttaacaaaataagcagttatgccggttcaattcaaatcaaattcta |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36716834 |
tatatacaattcaaattaaactcaacaaacagagaattatcatcacataacaagttaacaaaataagcagttatgcccgttcaattcaaatcaaattcta |
36716735 |
T |
|
| Q |
301 |
gttaaata--ctccaaagagaaatttctctcaactccataaaca |
342 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36716734 |
gttaaatactctccaaagagaaatttctctcaactccataaaca |
36716691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1482246 - 1482090
Alignment:
| Q |
1 |
tggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatttcctcagttccctgtctctccctccttctctcaatcgcctaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1482246 |
tggatcagagaaaatggtcagctggttagcatgaactggtgttccagtttgctcaatctcctcagttcccagtctctccctccttctctcaatcgcctaa |
1482147 |
T |
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| Q |
101 |
acacaatattaacaacactaatttagttcatattcaaattaataagatggaactaaa |
157 |
Q |
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||||||||||||||||||||| ||| |||| ||||||| |||| |||| |||||||| |
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| T |
1482146 |
acacaatattaacaacactaaattaattcaaattcaaactaatcagatagaactaaa |
1482090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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