View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10921_low_9 (Length: 256)
Name: NF10921_low_9
Description: NF10921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10921_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 8341431 - 8341659
Alignment:
| Q |
18 |
cgttcttccctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctccaagctctcataattcagaatgacaaggtttcatttaat |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8341431 |
cgttctttcctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctccaacctctcataattcagaatgacaaggtttcatttaat |
8341530 |
T |
|
| Q |
118 |
ccaagcttaaattggtctattaaactttgttgctaaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattatta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8341531 |
ccaagcttaatttggtctattaaactttgttgctaaatcagaagttgcatcttattgaacactacgctactgaatatacgacatgattaattcattatta |
8341630 |
T |
|
| Q |
218 |
agaatattgcatcttattcatgccctttg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8341631 |
agaatattgcatcttattcatgccctttg |
8341659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 8366506 - 8366420
Alignment:
| Q |
151 |
taaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattca |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | |||||||| || |||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8366506 |
taaattagaagtagcatcttattgaacagtacaccactgaataaataacatgattaattcattcctatgaatattgcatcttattca |
8366420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 8382505 - 8382421
Alignment:
| Q |
151 |
taaattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattca |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||| ||||||| ||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
8382505 |
taaattagaagtagcatcttattgaacagtacaccacttaatatataacatgattaattcatta--atgaatattgcatcttattca |
8382421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 17478544 - 17478637
Alignment:
| Q |
153 |
aattagaagttgcatcttattgaacactacgctactgaatatatgacatgattaattcattattaagaatattgcatcttattcatgccctttg |
246 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| | ||| ||||||| ||||||||||||||||| || ||||||||||||||||||| | |||||| |
|
|
| T |
17478544 |
aattagaagttttatcttattgcacaatacaccacttaatatataacatgattaattcattactatgaatattgcatcttattcaagtcctttg |
17478637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 17478380 - 17478469
Alignment:
| Q |
20 |
ttcttccctggtttaactcaaattctcttctccacttgattcagaaatgtcccttgctccaagctctcataattcagaatgacaaggttt |
109 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||| |||| ||||||||||||| |||| |||| ||| ||||||||||| |||||||||| |
|
|
| T |
17478380 |
ttcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgctgcaagttcttataattcagaacgacaaggttt |
17478469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 24952013 - 24951964
Alignment:
| Q |
59 |
ttcagaaatgtcccttgctccaagctctcataattcagaatgacaaggtt |
108 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
24952013 |
ttcagaaatgtcctatacttcaagctctcataattcataatgacaaggtt |
24951964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University