View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_high_12 (Length: 223)
Name: NF10922_high_12
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27120865 - 27120643
Alignment:
| Q |
1 |
aaatagattcattcggtcttattcctttctctctcatcaacctaaaacactccaacccatcttccaatttcccattttgaacataccccattatcatact |
100 |
Q |
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| T |
27120865 |
aaatagattcattcggtcttattcctttctctctcatcaacctaaaacactccaacccatcttccaatttcccattttgaacataccccattatcatact |
27120766 |
T |
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| Q |
101 |
actccaagaaacaacatctctcttcggcatttcatcaaacatcttctccgcatctctcacctcaccttttctaaccaaaccagccaacatagaattccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27120765 |
actccaagaaacaacatctctcttcggcatttcatcaaacatcttctccgcatctctcacctcaccttttctaaccaaaccagccaacatagaattccaa |
27120666 |
T |
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| Q |
201 |
gtaacaacatcactacaaacctc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27120665 |
gtaacaacatcactacaaacctc |
27120643 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 36466786 - 36466826
Alignment:
| Q |
101 |
actccaagaaacaacatctctcttcggcatttcatcaaaca |
141 |
Q |
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||||||||||||||||| ||| | ||||||||||||||||| |
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| T |
36466786 |
actccaagaaacaacatttctatacggcatttcatcaaaca |
36466826 |
T |
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