View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_high_3 (Length: 416)
Name: NF10922_high_3
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 15557576 - 15557760
Alignment:
| Q |
18 |
cttcattattcttcatacattaaaaaaccaatatcaaaatcaaaaccaacattaatttcctaattactaccatgtctattccacttccaccgaccaaaat |
117 |
Q |
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| T |
15557576 |
cttcattattcttcatacattaaaaaaccaatatcaaaatcaaaaccaacattaatttcctaattactaccatgtctattccacttccaccgacaaaaat |
15557675 |
T |
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| Q |
118 |
caacattaaccataacaaacttaatcaaaatcaattctttataaacaacccattaattaacaacaaaacccatcataaaaaccct |
202 |
Q |
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| T |
15557676 |
caacattaaccataacaaacttattcaaaatcaaatctttataaacaatacattaattaacaacaaaacccattataaaaaccct |
15557760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 271 - 394
Target Start/End: Original strand, 15557828 - 15557951
Alignment:
| Q |
271 |
aatcgaagaaacatacttaagagccaatttccgataagcagatttaatttcttgatcggtagagttcctggaaacgccaaggacttcatacgggtctcgc |
370 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15557828 |
aatcaaagaaacatacttaagagccaatttccgataagcagatttaatttcttgatcggtagagttcctggaaacgccaaggacttcatacgggtctcgc |
15557927 |
T |
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| Q |
371 |
cggagctgtttctcaccgtcggcg |
394 |
Q |
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| T |
15557928 |
cggagctgtttctcgccgtcggcg |
15557951 |
T |
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