View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_high_4 (Length: 410)
Name: NF10922_high_4
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 27120651 - 27120337
Alignment:
| Q |
1 |
acaaacctcatcaacctcttcctcaaacacccttttagcatactcagtcacatcaaaaccctcaaagtaaaaatgaataagcgcgttacgaacaaacaca |
100 |
Q |
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| T |
27120651 |
acaaacctcatcaacctcttcctcaaacaccctcttagcatactcactcacatcaaaaccctcaaagtaaaaatgaataagcgcgttacgaacaaacaca |
27120552 |
T |
|
| Q |
101 |
ttgcccgcgtaaccaagcttaaccacatgatcatgaacttgagcacctgaaacaatattgaaacattcttttcctttagtgcacgcgtgaaggaggaaag |
200 |
Q |
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| T |
27120551 |
ttgcccgtgtaaccaagcttaaccacatgatcatgaacttgaacacctgaaacaatattgaaacaatcttttccttttgtgcaggcgtgaaggaggaagg |
27120452 |
T |
|
| Q |
201 |
tgaatgtgtgttgattagcgttaaggaaacgacgtcgcattgaggagtaaagtgagagagaatttgaaggtggtgagtttgattttgcgtgaatgcgaat |
300 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27120451 |
tgaatgtgtgttgattagcgttgaggaaacggcgtcgcattgaggagtaaagtgagagagaatttgaaggtgatgagtttgattttgcgtgaatgcgaat |
27120352 |
T |
|
| Q |
301 |
gatggagttgaaagc |
315 |
Q |
| |
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||||||||||||||| |
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| T |
27120351 |
gatggagttgaaagc |
27120337 |
T |
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