View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_low_1 (Length: 624)
Name: NF10922_low_1
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 39275728 - 39275153
Alignment:
| Q |
18 |
gatagcatgtctaatggacatggctttggtaacaacaaccatggccatggcaatggcaatggccaaaaattcccttttggtgctaccaacactcactcac |
117 |
Q |
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| T |
39275728 |
gatagcatgtctaatggacatggctttggtaacaacaaccatggccatggcaatggc------caaaaattcccttttggtgctaccaacaaacactcac |
39275635 |
T |
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| Q |
118 |
ctcatcatggtggtggtgttaggccattcaatcatcatggtggtggccacaatgactatgtctcagagcatgaggagtatgagtttgaagcttataagga |
217 |
Q |
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| T |
39275634 |
ctcatcatggtggtggtgttaggccattcaatcatcatggtggtggccacaatgactatgtctcagagcatgaggagtatgagtttgaagcttacaagga |
39275535 |
T |
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| Q |
218 |
ggagcgtgttggttctggcgcgagtaagatggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatac |
317 |
Q |
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| T |
39275534 |
ggagtgtgttggttctggcgcgagtaagatggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatac |
39275435 |
T |
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| Q |
318 |
aataataacaacaggattaagcctcatggttatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaatatgcgcatgcttgct |
417 |
Q |
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| T |
39275434 |
aataataacaacaggattaagcctcatggtcatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaacatgcgcatgcttgct |
39275335 |
T |
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| Q |
418 |
tggttaccgttactacctctgg-----atcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataagttgccctgattataaatggt |
512 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39275334 |
tggttactgttactacctctggatcggatcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataatttgccctgattataaatggt |
39275235 |
T |
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| Q |
513 |
gcttcatatatatgatcaatgttatctgtaactcattctgaagctatggaatatatgaacctttatatatatgatatgatta |
594 |
Q |
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| T |
39275234 |
gcttcctatatatgatcaatgttatctgtaactcattctgaagctatgaaatatatggacttttatatatatgttatgatta |
39275153 |
T |
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