View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_low_10 (Length: 280)
Name: NF10922_low_10
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 5056958 - 5056707
Alignment:
| Q |
18 |
gtttttcacctataagtcctacgacatcgtcaggggagatatccataccaaatctacattctgagctggatttattcaaggtatcataacttttacttgt |
117 |
Q |
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| T |
5056958 |
gtttttcacctataagtcctacgacatcgtcaggggagatatccataccaaatctacattttgagctggatttattcaaggcatcataatttttacttgt |
5056859 |
T |
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| Q |
118 |
ctcctcatctttactcctctctctcttgccatgtgaggaccttgtaccgatttctaactcaccagaacatttttggaaatcactcattgttggcttctca |
217 |
Q |
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| T |
5056858 |
ctcctcatctttactcctctctctcttgccatgtgaggaccttgtaccgatttctaactcacgagaacatttttggaaatcactcatcgttggcttctca |
5056759 |
T |
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| Q |
218 |
atgcagtgatcccttaaattgattttgtccgcaaaagctacatgatcttcat |
269 |
Q |
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| T |
5056758 |
ctgcagtgatcccttaaattgattttgtccgcaaaagctacatgatcttcat |
5056707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 5179343 - 5179432
Alignment:
| Q |
167 |
atttctaactcaccagaacatttttggaaatcactcattgttggcttctcaatgcagtgatcccttaaattgattttgtccgcaaaagct |
256 |
Q |
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| T |
5179343 |
atttctgactcaccataacattttcggacatcactcatttccagcttctcagtgtaatgatcccttaagttgattttgtctacaaaagct |
5179432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 5185521 - 5185611
Alignment:
| Q |
178 |
accagaacatttttggaaatcactcattgttggcttctcaatgcagtgatccc-ttaaattgattttgtccgcaaaagctacatgatcttc |
267 |
Q |
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| T |
5185521 |
accataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaagctgcatgatcttc |
5185611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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