View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_low_13 (Length: 255)
Name: NF10922_low_13
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 36376499 - 36376764
Alignment:
| Q |
1 |
agatgatatactcagggagatggttgaagaggacaagtctaaacttattcatatgattatgaagaatgaaaagacttcaacaagctaatcaaaggtaaca |
100 |
Q |
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|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36376499 |
agatgacatactcagagagatggttgaagaggacaagtccaaacttattcatatgatcatgaagaatgaaaagacttcaacaagctaatcaaaggtaaca |
36376598 |
T |
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| Q |
101 |
aataaaa-ctgatattctgcattc---taacttcttgatttgctcaaaccttttatcacacctaatactatt---aatctta-----atcttaaggacta |
188 |
Q |
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| T |
36376599 |
aacaaaatttaatatttgtcattctctttatttttttcttgggtgaaactttttatcacacctaatactattgtctatattaattctatcttaaggacta |
36376698 |
T |
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| Q |
189 |
ttttaagtatatgactataaatatcaaattagagtatatgtaataagctaaaggaacacaacagatg |
255 |
Q |
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| T |
36376699 |
-tttaagtatatgattataaatatcacattaaagtatatgtaataagctaaaggaacacaacagatg |
36376764 |
T |
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Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 32248965 - 32248868
Alignment:
| Q |
1 |
agatgatatactcagggagatggttgaagaggacaagtctaaacttattcatatgattatgaagaatgaaaagacttcaacaagctaatcaaaggtaa |
98 |
Q |
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| T |
32248965 |
agatgatatacttagggagatggttgaagaggataagtctaaagctattcacatgattatgaagaatgaaaaggcttcaacaatctaatcaaaagtaa |
32248868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38209272 - 38209369
Alignment:
| Q |
1 |
agatgatatactcagggagatggttgaagaggacaagtctaaacttattcatatgattatgaagaatgaaaagacttcaacaagctaatcaaaggtaa |
98 |
Q |
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| T |
38209272 |
agatgatatacttagggatatggttgaagagaataagtctaaagctattcatatgattatgaagaatgaaaaggcttcaacaagctaataaaaggtaa |
38209369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8843505 - 8843433
Alignment:
| Q |
1 |
agatgatatactcagggagatggttgaagaggacaagtctaaacttattcatatgattatgaagaatgaaaag |
73 |
Q |
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|||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
8843505 |
agatgaaatacttagggagatggttgaagaggataagtctaaagctattcatatgattatgaagaatgaaaag |
8843433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35958463 - 35958381
Alignment:
| Q |
1 |
agatgatatactcagggagatggttgaagaggacaagtctaaacttattc-atatgattatgaagaatgaaaagacttcaacaa |
83 |
Q |
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||||||||| || ||||| ||||| || ||||| ||||||||| | |||| ||||||| ||||||||||||||| ||||||||| |
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| T |
35958463 |
agatgatattctaagggaaatggtcgaggaggataagtctaaa-tcattccatatgatcatgaagaatgaaaaggcttcaacaa |
35958381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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