View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_low_14 (Length: 250)
Name: NF10922_low_14
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41306043 - 41305809
Alignment:
| Q |
1 |
tcataatgcagtacttatatcaaataacatcttaaaaaacttaaaatttgatattacgtaaactgacacgtcgatagtgataataatttgagaaagtgga |
100 |
Q |
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| T |
41306043 |
tcataatgcagtacttatatcaaataacatcttaaaaaacttcaaatttgatattacgtaaactgacacgtcgatagtgataataatttgagaaagtgga |
41305944 |
T |
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| Q |
101 |
acatttgaatgtaagcaaccacatacacagtaaaaggatattttgcaatcctactgatcaaataacagttttagtaaatagataaagaactaggaatata |
200 |
Q |
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| T |
41305943 |
acatttgaatgtaaccaaccacatacacagtaaaaggatattttgcaatcctactgatcaaataacagttttagtaaatagataaagaactaggaatata |
41305844 |
T |
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| Q |
201 |
aaaggattgcaaaatagaaatctacaaccatgtat |
235 |
Q |
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| T |
41305843 |
aaaggattgcaaaatagaaatctacaaccatgtat |
41305809 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 41047861 - 41047915
Alignment:
| Q |
60 |
aaactgacacgtcgatagtgataataatttgagaaagtggaacatttgaatgtaa |
114 |
Q |
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| T |
41047861 |
aaactgacacgtcgacactgataataatttgaaaaagtggaataattgaatgtaa |
41047915 |
T |
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