View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10922_low_17 (Length: 219)
Name: NF10922_low_17
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 12 - 208
Target Start/End: Complemental strand, 27514606 - 27514410
Alignment:
| Q |
12 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27514606 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27514507 |
T |
|
| Q |
111 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
208 |
Q |
| |
|
| || |||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27514506 |
t-cagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtcca |
27514410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 27468755 - 27468957
Alignment:
| Q |
12 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaac-aatgtccaatacaaagcttccacttgctaccaaatgagat- |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27468755 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatg |
27468854 |
T |
|
| Q |
110 |
-------gtgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctga |
202 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
27468855 |
tgctcaagtgcagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccga |
27468954 |
T |
|
| Q |
203 |
tgt |
205 |
Q |
| |
|
||| |
|
|
| T |
27468955 |
tgt |
27468957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 27524243 - 27524041
Alignment:
| Q |
14 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat---- |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27524243 |
catagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgtgc |
27524144 |
T |
|
| Q |
110 |
----gtgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgt |
205 |
Q |
| |
|
||||||| |||||||| || |||||||||||||| | ||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27524143 |
tcaagtgcaacgtcatatttcttcatgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgt |
27524044 |
T |
|
| Q |
206 |
cca |
208 |
Q |
| |
|
||| |
|
|
| T |
27524043 |
cca |
27524041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 27508587 - 27508488
Alignment:
| Q |
12 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt |
111 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27508587 |
agcatagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt |
27508488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 27503642 - 27503442
Alignment:
| Q |
14 |
catagggataaggtctcatgtggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg |
112 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
27503642 |
catagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtg |
27503543 |
T |
|
| Q |
113 |
--caa------cctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatg |
204 |
Q |
| |
|
||| ||||||||||||| ||||||||||| | | | ||||| || |||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
27503542 |
atcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatg |
27503446 |
T |
|
| Q |
205 |
tcca |
208 |
Q |
| |
|
|||| |
|
|
| T |
27503445 |
tcca |
27503442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 27475988 - 27476187
Alignment:
| Q |
12 |
agcatagggataaggtctcatgtggtgttgtctaagagtgtaccctacctt-cttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatg |
110 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
27475988 |
agcacagggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatg |
27476087 |
T |
|
| Q |
111 |
tg--caa------cctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctga |
202 |
Q |
| |
|
|| ||| ||||||||||||| ||||||||||| | | | ||||| || || ||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
27476088 |
tgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccga |
27476184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 27489723 - 27489628
Alignment:
| Q |
111 |
tgcaacctcatatttgttgatgatttaattggtgtacttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
208 |
Q |
| |
|
||||||||||||||| || ||| ||||||||| |||| |||| || ||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
27489723 |
tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtcca |
27489628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 27508486 - 27508425
Alignment:
| Q |
147 |
cttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
208 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27508486 |
cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtcca |
27508425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 27517448 - 27517369
Alignment:
| Q |
30 |
catgtggtgttgtct-aagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga |
108 |
Q |
| |
|
||||||| ||||||| |||| ||||||| ||||||| |||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
27517448 |
catgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga |
27517369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 27556974 - 27557021
Alignment:
| Q |
161 |
aaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||| |||| |
|
|
| T |
27556974 |
aaacatgctttagacatgttttcttcattatgatagtgttgatttcca |
27557021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 27506325 - 27506263
Alignment:
| Q |
146 |
acttcataatgtttgaaacatgctttagacatgttttcttcattatgataatgctgatgtcca |
208 |
Q |
| |
|
|||||||||| || ||||||| || |||||||||||||||||||| | | |||||||||||| |
|
|
| T |
27506325 |
acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtcca |
27506263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 27497875 - 27497908
Alignment:
| Q |
173 |
gacatgttttcttcattatgataatgctgatgtc |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
27497875 |
gacatgttttcttcattatgataatgttgatgtc |
27497908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University