View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10922_low_6 (Length: 397)
Name: NF10922_low_6
Description: NF10922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10922_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 36574943 - 36575322
Alignment:
| Q |
1 |
atatgcgaccgagtgataccggatgaaagaattgtacataatttttactttctttaaataagagaaactaacatatggaacttgacatcgaaaagaatcg |
100 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36574943 |
atatacgactgagtgataccggatgaaagaattgtacataatttttactttctttaaataagagaaactaacatatcgaacttgacatcg---------- |
36575032 |
T |
|
| Q |
101 |
aatctgagaccttatgtgcataaaatatggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattccgttt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36575033 |
aatctgagatcttatgtgcataaaatatggaaaatgttgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcattttctattccgttt |
36575132 |
T |
|
| Q |
201 |
tccatttcatccaaaatgtccgatttaaccctccataatgtgtcaaactactatcaactctagacgactgtgcatggcatattccccactcccttttcca |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36575133 |
tccatttcacccaaaatgtccgatttaaccctccataatgtttcaaactactatcaactctagacgactctgcatggcatattccccactcccttttcca |
36575232 |
T |
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| Q |
301 |
tttccactgtgcactcatttctccttgttctggtgtattgttttaggctttgatttttgacttccacacttatagtctttcttcttctct |
390 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
36575233 |
tttccactgtgcactcgtttctccttgttctggcgtattgttttaggctttgattttttaattccacacctatagtctttcttcttctct |
36575322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 123 - 388
Target Start/End: Complemental strand, 16668549 - 16668284
Alignment:
| Q |
123 |
aaatatggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattccgttttccatttcatccaaaatgtccg |
222 |
Q |
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| T |
16668549 |
aaataaggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagatggtatttcctattctgttttccatttgattcaaaatgtccg |
16668450 |
T |
|
| Q |
223 |
atttaaccctccataatgtgtcaaactactatcaactctagacgactgtgcatggcatattccccactcccttttccatttccactgtgcactcatttct |
322 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||| |
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| T |
16668449 |
atttaaccctccataatttgtcaaactactatcaactctaggcgactgtgcatggcatattccccactcccttttccagttccactgtgcacccgtttct |
16668350 |
T |
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| Q |
323 |
ccttgttctggtgtattgttttaggctttgatttttgacttccacacttatagtctttcttcttct |
388 |
Q |
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| T |
16668349 |
ccttgttctgccgtattgttttaggctttgatttttgacttccacgcttatagtctttcttcttct |
16668284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 44516796 - 44516700
Alignment:
| Q |
129 |
ggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattccgttttccatttcatccaaaatgtccgattt |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
44516796 |
ggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaa-gtccgattt |
44516700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 282 - 390
Target Start/End: Complemental strand, 44516701 - 44516593
Alignment:
| Q |
282 |
ttccccactcccttttccatttccactgtgcactcatttctccttgttctggtgtattgttttaggctttgatttttgacttccacacttatagtctttc |
381 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44516701 |
ttccccactcccttttccatttccattgtgcactcgtttctccttgttctaccatattgttttaggctttgattttttacttccacacttatagtctttc |
44516602 |
T |
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| Q |
382 |
ttcttctct |
390 |
Q |
| |
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||||||||| |
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| T |
44516601 |
ttcttctct |
44516593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 8017797 - 8017764
Alignment:
| Q |
145 |
cacgagagaattctcgtgcgtatcccgcgaatga |
178 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
8017797 |
cacgagagaattctcgtgtgtatcccgcgaatga |
8017764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 178
Target Start/End: Original strand, 21133710 - 21133759
Alignment:
| Q |
129 |
ggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatga |
178 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
21133710 |
ggaaaatgctgaacgacacgagagaattctcgtgtgtatcccgcgaatga |
21133759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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