View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_10 (Length: 573)
Name: NF10923_high_10
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 513; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 4347247 - 4346701
Alignment:
| Q |
18 |
aaacagttctggaacaaaccacaagaaaga--aatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaatt |
115 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4347247 |
aaacagttctggaacaaactacaagaaagagaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaatt |
4347148 |
T |
|
| Q |
116 |
ctcaatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagttctttcctatggcatgtatatgacaggataatgtagttcttgcc |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4347147 |
ctcaatgcgagcatcctgacacaacaataaaaaagatgcatgctaaacaaaatagttctttcctatggcatgtatatgacaggataatgtagtttttgcc |
4347048 |
T |
|
| Q |
216 |
tgacatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaacta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4347047 |
tgacatttatttacttaatgcaatactgttgtctcctaaatcaaaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaacta |
4346948 |
T |
|
| Q |
316 |
gcgacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4346947 |
gcgacttgattgggataatttaaaccatgtcttagactcacatagtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttg |
4346848 |
T |
|
| Q |
416 |
gaaagccttctctacaatatttggaaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaat |
515 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4346847 |
gaaagccttctctacaa-atttggaaagccttctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaat |
4346749 |
T |
|
| Q |
516 |
cctcttggaagaacattcattttcatcaccaccaacaataacattcat |
563 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4346748 |
cctcttggaagagcattcattttcatcaccaccaacaataacattcat |
4346701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 259 - 428
Target Start/End: Complemental strand, 4363432 - 4363264
Alignment:
| Q |
259 |
aaggaaaagtaaactctataggcacacacttataagaatacattgaagagccaactagcgacttgattgggataatttaaaccatgtcttagactcacat |
358 |
Q |
| |
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|||||||| ||||||||||| ||||||||| ||||||||||||| |||| | |||||| ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
4363432 |
aaggaaaactaaactctatacgcacacact-ataagaatacattaaagatcaaactagtgacttgattgggagaatttaaaacatgtcttagactcacat |
4363334 |
T |
|
| Q |
359 |
agtcacagagaaattcttctagaagcgtactgggattgctgcgattgtttgcatttggaaagccttctct |
428 |
Q |
| |
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| |||||||| ||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
4363333 |
aatcacagaggaattcttcttgaagtgtactgagattgctgcgattgtttgcatttggaaaaccttctct |
4363264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 4363669 - 4363510
Alignment:
| Q |
22 |
agttctggaacaaaccacaagaaag--aaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctca |
119 |
Q |
| |
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||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4363669 |
agttctggaaccaacaacaagaaagggaaatctcctacaccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctca |
4363570 |
T |
|
| Q |
120 |
atgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaatagttctttcct |
179 |
Q |
| |
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|||| ||||||||| |||| |||| || |||||||||||||||||||||||||||||||| |
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| T |
4363569 |
atgcaagcatcctgccacaccaatgaaaaagatgcatgctaaacaaaatagttctttcct |
4363510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 447 - 561
Target Start/End: Complemental strand, 4363006 - 4362892
Alignment:
| Q |
447 |
tctccactattgctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacca |
546 |
Q |
| |
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||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
4363006 |
tctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaagagcattcattttcatcacca |
4362907 |
T |
|
| Q |
547 |
ccaacaataacattc |
561 |
Q |
| |
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||||||||||||||| |
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| T |
4362906 |
ccaacaataacattc |
4362892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 4121660 - 4121745
Alignment:
| Q |
45 |
agaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatc |
130 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |||||| |
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| T |
4121660 |
agaaatctcctacattagccaacaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcatc |
4121745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 45 - 169
Target Start/End: Original strand, 4118677 - 4118801
Alignment:
| Q |
45 |
agaaatctcctacactagccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaata |
144 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||||| |||| ||||||||||||||||||| |||||| ||| ||||| |||||| || |||| ||||| |
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| T |
4118677 |
agaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcatcttggcacatcaata |
4118776 |
T |
|
| Q |
145 |
aagaagatgcatgctaaacaaaata |
169 |
Q |
| |
|
|| || |||||||||||| |||||| |
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| T |
4118777 |
aaaaatatgcatgctaaataaaata |
4118801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 4131531 - 4131589
Alignment:
| Q |
64 |
cagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatg |
122 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4131531 |
cagcaaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctcaatg |
4131589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 4363521 - 4363463
Alignment:
| Q |
205 |
tagttcttgcctgacatttatttacttaatgcaatactgttgtctcctaaatcaaagga |
263 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
4363521 |
tagttctttcctgacatttatttacttaatgcaatattgttgtctcctacatcaaagga |
4363463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 4338097 - 4337992
Alignment:
| Q |
70 |
aaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaagaagatgcatgctaaacaaaata |
169 |
Q |
| |
|
|||||| || ||| |||||||| ||||||| ||||||||| |||||||| ||||||||||| || |||| | ||||| || ||||||| ||||||||||| |
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|
| T |
4338097 |
aaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaatatgcatgttaaacaaaata |
4337998 |
T |
|
| Q |
170 |
gttctt |
175 |
Q |
| |
|
||||| |
|
|
| T |
4337997 |
attctt |
4337992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 460 - 553
Target Start/End: Original strand, 4122501 - 4122594
Alignment:
| Q |
460 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccaccaacaa |
553 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| || ||||||||| |||| | |||||||| || |||||||||||| |||||||||||| |
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| T |
4122501 |
tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcagcaccaccaacaa |
4122594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 4337337 - 4337250
Alignment:
| Q |
460 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac |
547 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||| | |||||||||| |||| |||||||||| || ||||||||||| |||||||| |
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|
| T |
4337337 |
tttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccac |
4337250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 545
Target Start/End: Original strand, 4319153 - 4319238
Alignment:
| Q |
460 |
tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcacc |
545 |
Q |
| |
|
||||||||||| ||| |||| | | |||||||||| | ||||||||| |||| |||||| ||| || |||||||||||||||||| |
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|
| T |
4319153 |
tttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcacc |
4319238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 547
Target Start/End: Original strand, 4132482 - 4132571
Alignment:
| Q |
458 |
gctttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagaacattcattttcatcaccac |
547 |
Q |
| |
|
||||||||||| | ||| |||| ||| ||| | ||| || |||||||||| ||| | |||||||| || |||||||||||||||||||| |
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|
| T |
4132482 |
gctttcttcttctctgtttttgtttaaaatgacctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccac |
4132571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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