View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_high_12 (Length: 562)

Name: NF10923_high_12
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_high_12
NF10923_high_12
[»] chr5 (8 HSPs)
chr5 (1-552)||(17881881-17882433)
chr5 (414-552)||(14774579-14774717)
chr5 (414-548)||(15049424-15049558)
chr5 (430-528)||(15016676-15016774)
chr5 (1-74)||(14774988-14775062)
chr5 (290-379)||(14774792-14774879)
chr5 (290-372)||(15016879-15016961)
chr5 (117-175)||(15049735-15049793)
[»] chr1 (3 HSPs)
chr1 (414-528)||(36875058-36875172)
chr1 (27-93)||(36874722-36874788)
chr1 (107-186)||(36874833-36874912)


Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 17882433 - 17881881
Alignment:
Q  1 gtgattttgtatgtcatctgtgctaatgaccctgaataatttcactttt-catgctgctccccaatcatttttggacattttctcaactgacttcattgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17882433 gtgattttgtatgtcatctgtgctaatgaccctgaataatttcactttttcatgctgctccccaatcatttttggacattttctcaactgacttcattgt 17882334  T
Q  100 tatacaataggatgggatgctccaaccctgtgaacttgaagaattgttttctactgctccggacatgtagactgctttcctcatattttgttcctagata 199  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  17882333 tatacaataggatgggatgctccaaccctgtgaacttaaagaattgttttctactgctccagacaggtagactgctttcctcatattttgttcctagata 17882234  T
Q  200 agtttactttattttccaccattacatggtacatttatttgcactgtttccttgtatttcgtcttaagttggtaattggccaatatggtgtgtaatcttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17882233 agtttactttattttccaccattacatggtacatttatttgcactgtttccttgtatttcgtcttaagttggtaattggccaatatggtgtgtaatcttt 17882134  T
Q  300 cttatgctgtgcaatttttcaaatgtacacacacgctttaaggaggcggtatatacttttgactttgcttctttgtttttatgaagtccatcaatgagga 399  Q
    | ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17882133 catatgctgtgcaatttttcaaatgtacacacatgctttaaggatgtggtatatacttttgactttgcttctttgtttttatgaagtccatcaatgagga 17882034  T
Q  400 ctttttggaaatagtatttgatattttatgatttttaattgtagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggac 499  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17882033 ctttttggaaatagtatttgatattttatgatttttaattgcagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggac 17881934  T
Q  500 tatcactcgatgcgtttttgtcagaggtgaataagtcttttatctttgtctct 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17881933 tatcactcgatgcgtttttgtcagaggtgaataagtcttttatctttgtctct 17881881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 414 - 552
Target Start/End: Complemental strand, 14774717 - 14774579
Alignment:
Q  414 tatttgatattttatgatttttaattgtagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcg 513  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||  ||||||||||| |||| || |||| ||||||||||||||| |||||     
T  14774717 tatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgctgtagaaaggaatgcatttggaggactatcacttgatgca 14774618  T
Q  514 tttttgtcagaggtgaataagtcttttatctttgtctct 552  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  14774617 tttttgtcagaggtgcacaagtcttttatctttgtctct 14774579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 414 - 548
Target Start/End: Complemental strand, 15049558 - 15049424
Alignment:
Q  414 tatttgatattttatgatttttaattgtagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcg 513  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||||||  ||| ||   || ||||| ||||||| | |||||     
T  15049558 tatttgatattttatgatttttaattgcagtccctggattgaaaatccatacaaggatgctgtaggaaggaatatatttggagaactatcattagatgca 15049459  T
Q  514 tttttgtcagaggtgaataagtcttttatctttgt 548  Q
    ||||| ||||||||| | |||||||||||||||||    
T  15049458 tttttatcagaggtgcacaagtcttttatctttgt 15049424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 15016774 - 15016676
Alignment:
Q  430 atttttaattgtagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcgtttttgtcagaggtg 528  Q
    ||||||||||| ||||||||||||||| |||||||  ||||||||||| |||| || |||| ||||||| | ||||| ||||| |||||||||||||||    
T  15016774 atttttaattgcagtccctggattgaaaatccatacaaggatgctgtagaaaggaatgcatctggaggattgtcacttgatgcatttttgtcagaggtg 15016676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 14775062 - 14774988
Alignment:
Q  1 gtgattttgtatgtcatctgtgctaatgaccctgaataatttcac-ttttcatgctgctccccaatcatttttgg 74  Q
    ||||||||||  || || ||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  14775062 gtgattttgtgagttatttgtgcaaatgaccctgactaatttcacattttcatgctgcttcccaatcatttttgg 14774988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 379
Target Start/End: Complemental strand, 14774879 - 14774792
Alignment:
Q  290 tgtaatctttcttatgctgtgcaatttttcaaatgtacacacacgctttaaggaggcggtatatacttttgactttgcttctttgttttt 379  Q
    ||||||||||||||||  |||||||| |||||||||||| ||| |||| ||||| | ||  ||||||| ||||||| |||| ||||||||    
T  14774879 tgtaatctttcttatgtcgtgcaattattcaaatgtacatacatgcttgaaggatgtgg--tatacttgtgacttttcttcattgttttt 14774792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 15016961 - 15016879
Alignment:
Q  290 tgtaatctttcttatgctgtgcaatttttcaaatgtacacacacgctttaaggaggcggtatatacttttgactttgcttctt 372  Q
    |||||||||||||||| |||| |||||||||||||||||  ||   |||||||| | ||| ||||||  ||||||||||||||    
T  15016961 tgtaatctttcttatgttgtggaatttttcaaatgtacattcaatttttaaggatgtggtttatactgctgactttgcttctt 15016879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 15049793 - 15049735
Alignment:
Q  117 tgctccaaccctgtgaacttgaagaattgttttctactgctccggacatgtagactgct 175  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||| | ||||| ||||    
T  15049793 tgctgcaaccccgtgaacttgaagaactgttttctactgctccggaaaggtagattgct 15049735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 414 - 528
Target Start/End: Original strand, 36875058 - 36875172
Alignment:
Q  414 tatttgatattttatgatttttaattgtagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcg 513  Q
    ||||||||||||||  ||||| ||||||||||||||||| | | ||| |||||||||||||||  |||| || |||| ||||||||||||||| |||||     
T  36875058 tatttgatattttacaattttaaattgtagtccctggatcggaaatctatatgaggatgctgttgaaagaaatgcatttggaggactatcacttgatgca 36875157  T
Q  514 tttttgtcagaggtg 528  Q
    |||||||| ||||||    
T  36875158 tttttgtctgaggtg 36875172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 36874722 - 36874788
Alignment:
Q  27 tgaccctgaataatttcacttttcatgctgctccccaatcatttttggacattttctcaactgactt 93  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| | ||||||||    
T  36874722 tgaccctgaataattttacttttcttgctgctccccaatcattttcagacattttcactactgactt 36874788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 36874833 - 36874912
Alignment:
Q  107 taggatgggatgctccaaccctgtgaacttgaagaattgttttctactgctccggacatgtagactgctttcctcatatt 186  Q
    |||||||||||| | |  ||| |||||||||||||||||||||| ||||| ||||| | ||||| |||| |||| |||||    
T  36874833 taggatgggatgttgcgtccccgtgaacttgaagaattgttttccactgccccggaaaggtagattgctatcctaatatt 36874912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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