View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_13 (Length: 528)
Name: NF10923_high_13
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 32177784 - 32177284
Alignment:
| Q |
19 |
catctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177784 |
catctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcac |
32177685 |
T |
|
| Q |
119 |
aactccttgatcactttcactcttgtttccctcaagttaaccgtgtcccatttaaccttccacctccaccaccttcttcttccatctccgttgacccttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177684 |
aactccttgatcactttcactcttgtttccctcaagttaaccgtgtcccatttaaccttccacctccaccaccttcttcttccatctccgttgacccttt |
32177585 |
T |
|
| Q |
219 |
tttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccattactgtttttatctctgacatactt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32177584 |
tttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccatcactgtttttatctctgacatactt |
32177485 |
T |
|
| Q |
319 |
cttttttcccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177484 |
cttttttcccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttcc |
32177385 |
T |
|
| Q |
419 |
ctactcttactcaatccttatccttacaagaacaagaatatgatgcttctgatggggttctagttccaggcattccattttcacctttaccatattcatc |
518 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32177384 |
ctactcttgctcaatccttatcctcacaagaacaagaatatgatgcttctgatggggttctagttccaggcattccattttcacctttaccatattcatc |
32177285 |
T |
|
| Q |
519 |
t |
519 |
Q |
| |
|
| |
|
|
| T |
32177284 |
t |
32177284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 32184945 - 32184536
Alignment:
| Q |
19 |
catctcacaccattcctaagactagcatcattgtttctcaacaacaattgcaaagtcactctcatcactcctcttcccactgtttctcttgcagaatcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
32184945 |
catctcacaccattcctaagactagcatcattgtttcttaacaacaattgcaaagtcactctcatcactcctcttcccactgtctctcttgcagaatccc |
32184846 |
T |
|
| Q |
119 |
aactccttgatcactttcactcttgtttccctcaagttaaccgtgtcccatttaaccttccacctccaccaccttcttcttccatctccgttgacccttt |
218 |
Q |
| |
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| || ||||||||||||||||||| |||||||||||| ||| |||||||| | |||| |||| | | ||| |||| ||||| ||||| |
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| T |
32184845 |
agcttcttgatcactttcactcttctttccctcaagtcaacttcatcccatttcatcttcaaccttcttctcctgattct------gttgttgatccttt |
32184752 |
T |
|
| Q |
219 |
tttccttcgagtccaaacccttcgcaactccacccaccttcttccttcattgatctcttcactttcaccacccattactgtttttatctctgacatactt |
318 |
Q |
| |
|
||||| | |||| |||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||| || | |
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|
| T |
32184751 |
tttccatagagttcaaacccttcgcgactccaccaaccttcttcctcctttgatctcttcactttcaccacccatcactgttttcatctctgatatcttc |
32184652 |
T |
|
| Q |
319 |
cttttttcccctctcaataaaatcactcaaaaactttctctccctaattacatcttgaacacttcttcttctgctatgttctccttattctctcatttcc |
418 |
Q |
| |
|
||| |||| ||||||| | |||||||||| |||||||||| ||||| || | |||| |||||||| || | ||||||||||| || ||||| |||| |
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|
| T |
32184651 |
cttctttcacctctcatttcaatcactcaacaactttctctacctaactataccttgtttacttcttcagcttccatgttctccttcttttctcacttcc |
32184552 |
T |
|
| Q |
419 |
ctactcttactcaatc |
434 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
32184551 |
ctactcttgctcaatc |
32184536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 32184499 - 32184460
Alignment:
| Q |
480 |
agttccaggcattccattttcacctttaccatattcatct |
519 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
32184499 |
agttccaggtattgcattttcacctttaccatattcatct |
32184460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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