View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_16 (Length: 479)
Name: NF10923_high_16
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 29964114 - 29964397
Alignment:
| Q |
19 |
atgaaactcactatgctctttagtgtatctttttctaatgttgttcctaaagggtttgatggatttgttatgattaatcctttcacattgatgttttctt |
118 |
Q |
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| T |
29964114 |
atgaaactcactatgctctttagtgtatctttttctaatgttgttcctaaaggatttgatggatttgttatgattaacccttttacattgatgttttctt |
29964213 |
T |
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| Q |
119 |
cttgtgcttttttatgagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaattagttgcacaccggttctcca |
218 |
Q |
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| T |
29964214 |
cttgtgcttttttatgagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaattagttgcacaccggttctcca |
29964313 |
T |
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| Q |
219 |
acataagtcacggacaaatctgtaacaacacaaaccaaacatgtctattagtcaaattaaacatgtaatttttgtatcaaattt |
302 |
Q |
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| T |
29964314 |
acataagtcacggacaaatctgtagcaacacaaaccaaacatgtttattagtcaaattaaacatgtaatttttgtatcatattt |
29964397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 302 - 466
Target Start/End: Original strand, 29964424 - 29964588
Alignment:
| Q |
302 |
taacatgttgactaaagataagacctaatcaaagctcatataaagtttagatgaagaattgagtttggttaaaacatcttagagataagtggtaatttta |
401 |
Q |
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| T |
29964424 |
taacatgttgactaaagataagacctaatcaaagctcatatgaagtttagatgaagaattgagtttggttaaaacatcttagagataagtggtaatttta |
29964523 |
T |
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| Q |
402 |
aaatttgcctcttcttaattaagtcataatattgaatcaaattcaaatcctatgtggtccctatg |
466 |
Q |
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| T |
29964524 |
aaatttgccacttcttaattaagtcataatattgaatcaaattcaaatcctatgtggtccctatg |
29964588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 10969083 - 10968875
Alignment:
| Q |
34 |
ctctttagtgtatctttttctaatgttgttcctaaagggtttgatggatttgttatgattaatcctttcacattgatgttttcttcttgtgcttttttat |
133 |
Q |
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||||||||||| ||||| ||||| ||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||| | ||||||||||||||| | |
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| T |
10969083 |
ctctttagtgtctctttgtctaaggttgttcctaatgggttggaggggtttgttatgatcaacccttttacattgatgttgttttcttgtgcttttttgt |
10968984 |
T |
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| Q |
134 |
gagcttcttcaagtgcttctcttgttatcttgaaattgtttgagctatgacattggacaggaattagttgcacaccggttctccaacataagtcacggac |
233 |
Q |
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| T |
10968983 |
atgctacttcaagtgcttctcttgttattttgaagttgttggagctatcacaatggacaggaattaattgaacctttgttctccaacacaagtcacgaac |
10968884 |
T |
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| Q |
234 |
aaatctgta |
242 |
Q |
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|||||||| |
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| T |
10968883 |
gaatctgta |
10968875 |
T |
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