View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_high_17 (Length: 475)

Name: NF10923_high_17
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_high_17
NF10923_high_17
[»] chr5 (3 HSPs)
chr5 (12-461)||(6569639-6570110)
chr5 (233-274)||(8080924-8080965)
chr5 (187-231)||(39787191-39787235)
[»] chr1 (7 HSPs)
chr1 (174-274)||(13045574-13045677)
chr1 (227-274)||(13046383-13046430)
chr1 (233-266)||(33773105-33773138)
chr1 (187-231)||(3282856-3282900)
chr1 (187-231)||(3284557-3284601)
chr1 (187-231)||(9312084-9312128)
chr1 (187-231)||(17449366-17449410)
[»] chr4 (8 HSPs)
chr4 (184-271)||(8005803-8005894)
chr4 (184-264)||(6732691-6732772)
chr4 (187-231)||(3529279-3529323)
chr4 (187-231)||(23985829-23985873)
chr4 (231-271)||(25203265-25203305)
chr4 (187-231)||(52518814-52518858)
chr4 (187-231)||(52520656-52520700)
chr4 (187-231)||(54296483-54296527)
[»] chr3 (5 HSPs)
chr3 (233-271)||(35244001-35244039)
chr3 (173-266)||(41874414-41874510)
chr3 (105-212)||(20302700-20302811)
chr3 (184-269)||(35244076-35244155)
chr3 (187-231)||(1140056-1140100)
[»] chr8 (2 HSPs)
chr8 (226-274)||(28220446-28220494)
chr8 (189-242)||(31032137-31032191)
[»] chr6 (4 HSPs)
chr6 (227-274)||(6257847-6257894)
chr6 (187-231)||(1088785-1088829)
chr6 (226-274)||(6232712-6232760)
chr6 (187-231)||(15868447-15868491)
[»] chr2 (3 HSPs)
chr2 (158-215)||(12072091-12072149)
chr2 (233-266)||(25306719-25306752)
chr2 (233-266)||(41602364-41602397)
[»] chr7 (5 HSPs)
chr7 (233-274)||(30511053-30511094)
chr7 (174-230)||(4571066-4571122)
chr7 (187-231)||(28124720-28124764)
chr7 (187-231)||(28126547-28126591)
chr7 (187-231)||(37405582-37405626)
[»] scaffold0251 (1 HSPs)
scaffold0251 (187-231)||(6281-6325)
[»] scaffold0057 (1 HSPs)
scaffold0057 (187-231)||(58841-58885)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 12 - 461
Target Start/End: Complemental strand, 6570110 - 6569639
Alignment:
Q  12 atgaaattatacatgaagaataagtgtaagtttttctattatgaatcatgggatcggagggatatagatcatagatgcaagcaagatagagtgcatagga 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6570110 atgaaattatacatgaagaataagtgtaagtttttctattatgaatcatgggatcggagggatatagatcatagatgcaagcaagatagagtgcatagga 6570011  T
Q  112 gtattcatgaggaagatactcagaggttcatgtagaaggaatatatattgatata---agaatagaaatggtacaatgagtgttcctgtatatagagatt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||    
T  6570010 gtattcatgaggaagatactcagaggttcatgtagaaggaatatatattgatataagaagaatagaaatggtacaatgagtgttcctatatatagagatt 6569911  T
Q  209 agttggactagctaactctaactctaaccaagcttctcaaacac------------------tctaactaactatagtgtaatattttccgtaactgata 290  Q
    |||||||||| ||||||||||||||||||||| |||||||||||                  ||||||||||||||||||||||||||||||||||||||    
T  6569910 agttggactaactaactctaactctaaccaagtttctcaaacactaactaactatagtgtattctaactaactatagtgtaatattttccgtaactgata 6569811  T
Q  291 tggagttccaggccgattttgagaactaatatgaaaataaacctttagctagacttgtgagttgagcgtaaatattttttgtggacaccttggtggtcaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6569810 tggagttccaggccgattttgagaactaatatgaaaataaacctttagctagacttgtgagttgagcgtaaatattttttgtggaaaccttggtggtcaa 6569711  T
Q  391 tcagacctaataaattactccaaaattctcaatcttcttcccatataatgtgcctgtt-gatgtgtatgttg 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6569710 tcagacctaataaattactccaaaattctcaatcttcttcccatataatgtgcctgttagatgtgtatgttg 6569639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 8080965 - 8080924
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  8080965 taaccaagcttctcaaacactctaactaactatagtctaata 8080924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 39787191 - 39787235
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  39787191 agtgttcctatatatagagattagtttgagtaactaactctaact 39787235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 13045677 - 13045574
Alignment:
Q  174 aaatggtacaatgagtgttcctgtatatagagattagttggactagctaactctaact----ctaaccaagcttctcaaacactctaactaactatagtg 269  Q
    |||||||| ||||||||||| | |||||||| |||||||||| || ||||||||||||    |||||||| ||||||||||||||| |||||||||||||    
T  13045677 aaatggtataatgagtgttc-tatatatagatattagttggattaactaactctaactaacactaaccaaacttctcaaacactcttactaactatagtg 13045579  T
Q  270 taata 274  Q
    |||||    
T  13045578 taata 13045574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 13046430 - 13046383
Alignment:
Q  227 taactctaaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    ||||| |||| |||||||||||||||| |||||||||||||| |||||    
T  13046430 taactataactaagcttctcaaacactttaactaactatagtataata 13046383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 33773138 - 33773105
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactata 266  Q
    ||||||| ||||||||||||||||||||||||||    
T  33773138 taaccaaacttctcaaacactctaactaactata 33773105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 3282900 - 3282856
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  3282900 agtgttcctatatatagagattagtttgagtaactaactctaact 3282856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 3284601 - 3284557
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  3284601 agtgttcctatatatagagattagtttgagtaactaactctaact 3284557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 9312128 - 9312084
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  9312128 agtgttcctatatatagagattagtttgagtaactaactctaact 9312084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 17449410 - 17449366
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  17449410 agtgttcctatatatagagattagtttgagtaactaactctaact 17449366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 8005894 - 8005803
Alignment:
Q  184 atgagtgttcctgtatatagagattagttggactagctaactctaactc-----taaccaagcttctcaaacactctaactaactatagtgta 271  Q
    |||||||||||| ||||||||||||||||  | || |||| |||||||      |||||||||||||||||||||||||||||||||||||||    
T  8005894 atgagtgttcctatatatagagattagtta-agtaactaattctaactaatccttaaccaagcttctcaaacactctaactaactatagtgta 8005803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 6732691 - 6732772
Alignment:
Q  184 atgagtgttcctgtatatagagattagttggactagctaactctaactc-taaccaagcttctcaaacactctaactaacta 264  Q
    |||||||||||| ||||||||||||| |||||||| ||    ||||||| ||||||| ||||||||| ||||||||||||||    
T  6732691 atgagtgttcctatatatagagattaattggactaactccaactaactcttaaccaaacttctcaaatactctaactaacta 6732772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 3529279 - 3529323
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  3529279 agtgttcctatatatagagattagtttgagtaactaactctaact 3529323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 23985873 - 23985829
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  23985873 agtgttcctatatatagagattagtttgaataactaactctaact 23985829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 25203265 - 25203305
Alignment:
Q  231 tctaaccaagcttctcaaacactctaactaactatagtgta 271  Q
    ||||||||| ||| ||||||| |||||||||||||||||||    
T  25203265 tctaaccaaacttttcaaacattctaactaactatagtgta 25203305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 52518858 - 52518814
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  52518858 agtgttcctatatatagagattagtttgagtaactaactctaact 52518814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 52520700 - 52520656
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  52520700 agtgttcctatatatagagattagtttgagtaactaactctaact 52520656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 54296527 - 54296483
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  54296527 agtgttcctatatatagagattagtttgagtaactaactctaact 54296483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 35244001 - 35244039
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactatagtgta 271  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35244001 taaccaagcttctcaaacactctaactaactatagtgta 35244039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 41874510 - 41874414
Alignment:
Q  173 gaaatggtacaatgagtgttcctgtatatagagattagttggactagctaactctaactc-----taaccaagcttctcaaacactctaactaactata 266  Q
    ||||||||||| ||||||||||| ||||||||| |||||||   || ||||||||||||      ||||||| ||||||||||||||||||||||||||    
T  41874510 gaaatggtaca-tgagtgttcctatatatagagtttagttgtg-taactaactctaactaactcttaaccaaacttctcaaacactctaactaactata 41874414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 20302811 - 20302700
Alignment:
Q  105 cataggagtattcatgaggaagatactca--gaggttcatgtagaaggaatatatattgatataaga--atagaaatggtacaatgagtgttcctgtata 200  Q
    ||||||| ||||||||||| |||||||||  ||| ||| | || || ||||||| ||| ||| ||||  || |||||||||| |||||||||| | ||||    
T  20302811 cataggactattcatgagggagatactcacagagattcgtatacaatgaatatagatttataaaagataatggaaatggtacgatgagtgttcttatata 20302712  T
Q  201 tagagattagtt 212  Q
    ||||||||||||    
T  20302711 tagagattagtt 20302700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 35244155 - 35244076
Alignment:
Q  184 atgagtgttcctgtatatagagattagttggactagctaactctaactctaaccaagcttctcaaacactctaactaactatagtg 269  Q
    |||||||||||| ||||||||| |||||||   || ||||||||     ||||||||||||||||||||||||| |||||||||||    
T  35244155 atgagtgttcctatatatagagtttagttgtg-taactaactct-----taaccaagcttctcaaacactctaattaactatagtg 35244076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 1140100 - 1140056
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  1140100 agtgttcctatatatagagattagtttgagtaactaactctaact 1140056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 28220446 - 28220494
Alignment:
Q  226 ctaactctaaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  28220446 ctaactctaaccaagcttctcaaagattctaactaactatattgtaata 28220494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 31032137 - 31032191
Alignment:
Q  189 tgttcctgtatatagagattagttggactagctaactctaac-tctaaccaagct 242  Q
    ||||||| |||||||||||||||| || || ||||||||||| ||||||||||||    
T  31032137 tgttcctatatatagagattagtttgagtaactaactctaacttctaaccaagct 31032191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 6257894 - 6257847
Alignment:
Q  227 taactctaaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||    
T  6257894 taactctaaccaaacttctcaaacactctaactaaccataatgtaata 6257847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 1088785 - 1088829
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||||    
T  1088785 agtgttcctatatatagagattagtttgactaactaactctaact 1088829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 6232760 - 6232712
Alignment:
Q  226 ctaactctaaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    |||||||||||||| ||| | ||||||||||||||||||| ||| ||||    
T  6232760 ctaactctaaccaaactttttaaacactctaactaactatggtgcaata 6232712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 15868491 - 15868447
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  15868491 agtgttcctatatatagagattagtttgagtaactaactctaact 15868447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 12072149 - 12072091
Alignment:
Q  158 attgatataagaata-gaaatggtacaatgagtgttcctgtatatagagattagttgga 215  Q
    ||||||| ||||||| | |||||||||||||||||||||  ||||||||||| ||||||    
T  12072149 attgataaaagaatatggaatggtacaatgagtgttcctacatatagagatttgttgga 12072091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 25306752 - 25306719
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactata 266  Q
    ||||||| ||||||||||||||||||||||||||    
T  25306752 taaccaaacttctcaaacactctaactaactata 25306719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 41602397 - 41602364
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactata 266  Q
    ||||||| ||||||||||||||||||||||||||    
T  41602397 taaccaaacttctcaaacactctaactaactata 41602364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 30511094 - 30511053
Alignment:
Q  233 taaccaagcttctcaaacactctaactaactatagtgtaata 274  Q
    ||||||| ||||||||||||  ||||||||||||||||||||    
T  30511094 taaccaaacttctcaaacaccgtaactaactatagtgtaata 30511053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 4571122 - 4571066
Alignment:
Q  174 aaatggtacaatgagtgttcctgtatatagagattagttggactagctaactctaac 230  Q
    ||||| |||||||||||||| | ||||||||||||||||| | ||  ||||||||||    
T  4571122 aaatgatacaatgagtgttcatatatatagagattagttgaagtaattaactctaac 4571066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 28124720 - 28124764
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  28124720 agtgttcctatatatagagattagtttgagtaactaactctaact 28124764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 28126547 - 28126591
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  28126547 agtgttcctatatatagagattagtttgagtaactaactctaact 28126591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 37405582 - 37405626
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  37405582 agtgttcctatatatagagattagtttgagtaactaactctaact 37405626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 6325 - 6281
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  6325 agtgttcctatatatagagattagtttgagtaactaactctaact 6281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 58885 - 58841
Alignment:
Q  187 agtgttcctgtatatagagattagttggactagctaactctaact 231  Q
    ||||||||| |||||||||||||||| || || ||||||||||||    
T  58885 agtgttcctatatatagagattagtttgagtaactaactctaact 58841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University