View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_high_18 (Length: 474)

Name: NF10923_high_18
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_high_18
NF10923_high_18
[»] scaffold0493 (1 HSPs)
scaffold0493 (1-459)||(8107-8564)
[»] chr7 (13 HSPs)
chr7 (302-459)||(4501317-4501474)
chr7 (311-458)||(32584661-32584808)
chr7 (309-459)||(43383228-43383378)
chr7 (311-459)||(28517187-28517335)
chr7 (326-452)||(27521537-27521663)
chr7 (382-459)||(30216029-30216106)
chr7 (395-459)||(983008-983072)
chr7 (419-459)||(24527648-24527688)
chr7 (416-459)||(2904424-2904467)
chr7 (311-354)||(5825435-5825478)
chr7 (418-459)||(19277352-19277393)
chr7 (418-459)||(21326845-21326886)
chr7 (311-452)||(43856940-43857081)
[»] chr4 (12 HSPs)
chr4 (311-459)||(53619645-53619793)
chr4 (311-457)||(31847148-31847294)
chr4 (302-447)||(54927527-54927672)
chr4 (311-450)||(12918272-12918411)
chr4 (302-459)||(24719993-24720150)
chr4 (311-458)||(50000825-50000972)
chr4 (288-459)||(132444-132617)
chr4 (311-459)||(25504354-25504500)
chr4 (414-460)||(54190859-54190905)
chr4 (414-459)||(30940742-30940787)
chr4 (418-459)||(56462113-56462154)
chr4 (395-459)||(12053472-12053536)
[»] chr1 (11 HSPs)
chr1 (311-459)||(34644625-34644773)
chr1 (377-459)||(23043936-23044018)
chr1 (414-459)||(2764538-2764583)
chr1 (418-459)||(21473062-21473103)
chr1 (418-459)||(31737330-31737371)
chr1 (395-459)||(19035506-19035570)
chr1 (419-453)||(19035424-19035458)
chr1 (414-459)||(20259800-20259845)
chr1 (418-459)||(25375840-25375881)
chr1 (418-459)||(29169800-29169841)
chr1 (414-459)||(50314627-50314672)
[»] chr2 (15 HSPs)
chr2 (302-459)||(23484829-23484986)
chr2 (311-459)||(4412966-4413114)
chr2 (380-459)||(41867877-41867956)
chr2 (395-459)||(1296034-1296098)
chr2 (418-459)||(2888575-2888616)
chr2 (395-459)||(5532478-5532542)
chr2 (311-459)||(28225059-28225207)
chr2 (390-459)||(3968388-3968457)
chr2 (311-448)||(44686490-44686626)
chr2 (395-459)||(27502421-27502485)
chr2 (302-357)||(18744845-18744900)
chr2 (418-459)||(19161790-19161831)
chr2 (418-459)||(44720382-44720423)
chr2 (419-459)||(11921218-11921258)
chr2 (419-459)||(33612555-33612595)
[»] chr8 (8 HSPs)
chr8 (311-459)||(24125087-24125235)
chr8 (302-459)||(500286-500443)
chr8 (414-459)||(10556296-10556341)
chr8 (302-459)||(35739878-35740034)
chr8 (416-459)||(10189602-10189645)
chr8 (311-459)||(39434726-39434874)
chr8 (405-459)||(38815353-38815407)
chr8 (416-452)||(27422150-27422186)
[»] chr5 (15 HSPs)
chr5 (311-459)||(35310507-35310655)
chr5 (368-459)||(8858975-8859066)
chr5 (311-457)||(33691955-33692101)
chr5 (302-459)||(32269688-32269845)
chr5 (311-451)||(27336760-27336900)
chr5 (364-459)||(3114116-3114211)
chr5 (404-459)||(15292019-15292074)
chr5 (414-457)||(43129595-43129638)
chr5 (395-459)||(25663016-25663080)
chr5 (333-459)||(8100611-8100737)
chr5 (418-459)||(37873645-37873686)
chr5 (414-459)||(42921756-42921801)
chr5 (366-459)||(13166865-13166958)
chr5 (414-459)||(35456015-35456060)
chr5 (419-459)||(7143765-7143805)
[»] scaffold0119 (1 HSPs)
scaffold0119 (395-459)||(16193-16257)
[»] chr6 (10 HSPs)
chr6 (315-459)||(17249209-17249353)
chr6 (311-459)||(357617-357765)
chr6 (311-459)||(34304555-34304703)
chr6 (395-460)||(45661-45726)
chr6 (302-459)||(959639-959796)
chr6 (404-459)||(3714976-3715031)
chr6 (416-459)||(24016396-24016439)
chr6 (311-357)||(4206496-4206542)
chr6 (331-448)||(28008907-28009024)
chr6 (419-459)||(4165930-4165970)
[»] scaffold0085 (1 HSPs)
scaffold0085 (367-457)||(37391-37481)
[»] scaffold1768 (1 HSPs)
scaffold1768 (302-428)||(75-201)
[»] chr3 (10 HSPs)
chr3 (302-357)||(7901019-7901074)
chr3 (302-459)||(13582568-13582725)
chr3 (414-459)||(37133002-37133047)
chr3 (302-459)||(39583120-39583277)
chr3 (395-459)||(52741496-52741560)
chr3 (414-457)||(35484695-35484738)
chr3 (416-459)||(38670885-38670928)
chr3 (418-459)||(26772817-26772858)
chr3 (418-459)||(37992391-37992432)
chr3 (418-459)||(46940777-46940818)
[»] scaffold0148 (1 HSPs)
scaffold0148 (334-459)||(33309-33433)


Alignment Details
Target: scaffold0493 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 8107 - 8564
Alignment:
Q  1 attacatgtatatttaattgttggtgtgttgtgttacgaatccatggatcaaaaggaggaagataacaaacatggaaaagatagagagcacgttgatgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8107 attacatgtatatttaattgttggtgtgttgtgttacgaatccatggatcaaaagcaggaagataacaaacatggaaaagatagagagcacgttgatgct 8206  T
Q  101 caggtcacaagattgtatgttgaaaaacatattgaactaattgaaaagaatgtgaaaattgagaaatcggattcactgttgtcatgattttcacgcattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8207 caggtcacaagattgtatgttgaaaaacatattgaactaattgaaaagaatgtgaaaattgagaaatcggattcactgttgtcatgattttcacgcattc 8306  T
Q  201 agtctgtgcatcaaattggtgaatgcatggaaatgttaacaacagagaatcgtggtcctttgagaatgattaggccaacaaattttctggtttacatata 300  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8307 agtc-gtgcatcaaattggtgaatgcgtggaaatgttaacaacagagaatcgtggtcctttgagaatgattaggccaacaaattttctggtttacatata 8405  T
Q  301 agtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagct 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406 agtaggagggaaacatgcatgtttggactggactggggtttccccacttgtaggattgagagacggggctttcactgtgggacaagcaaccttcaaagct 8505  T
Q  401 gcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  8506 gcttcaaacaatttggttgaacatgagaaaacatgttctgacaatcaacatgtttttat 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 302 - 459
Target Start/End: Complemental strand, 4501474 - 4501317
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| |||||||||||| ||||||||||||||  | | |||| |||| || || |||||| ||||| | |||||||    
T  4501474 gtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggattaggtgtcgggccttttaccgtaggacaaacaaccctaaaagctg 4501375  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | ||||||||  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  4501374 cgtcaaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 4501317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 458
Target Start/End: Complemental strand, 32584808 - 32584661
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||| ||||||| || |||||||||||  | | ||||| ||| || || ||||| |||||| | |||  ||| |||||||    
T  32584808 aaacatgcatgtgtggacttgactcgggtttcacctcttgtgggattaggggtcggggattttacggtaggacatgcaaccctaaaaattgcatcaaaca 32584709  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgttttta 458  Q
    |  ||||||||||||||||||| ||||||||||||||| ||| |||||    
T  32584708 aagtggtcaaacatgagaaaacgtgttctgacaatcaagatgctttta 32584661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 309 - 459
Target Start/End: Complemental strand, 43383378 - 43383228
Alignment:
Q  309 ggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaa 408  Q
    ||||||||||||   | |||| |||||||||||||||||||||||||||||||  ||||||||| ||| ||||||| ||| ||  ||||||  |||||||    
T  43383378 ggaaacatgcatacgtcgacttgactggggtttccccacttgtgggattgagaatcggggctttaactatgggacaggcagcccacaaagccacttcaaa 43383279  T
Q  409 caatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
     ||  ||| ||| ||||||||| |||||||   ||||||||||| ||||||    
T  43383278 taaagtggccaaccatgagaaagcatgttccagcaatcaacatgcttttat 43383228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 28517187 - 28517335
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||| ||  | |  |||||||| || || |||||  ||||| | |||||||| |||| ||    
T  28517187 aaacatgtatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacagacaaccctaaaagctgcgtcaagca 28517286  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | ||||  ||||||||||||||||||||    
T  28517287 aagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttat 28517335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 326 - 452
Target Start/End: Complemental strand, 27521663 - 27521537
Alignment:
Q  326 gactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatg 425  Q
    |||| ||||| | |||| ||| ||||||||||  | | |||| |||| || || ||||| ||| |||| |||| ||| | ||||||  ||||||||||||    
T  27521663 gacttgactgagatttcaccatttgtgggattaggtgtcgggccttttacggtaggacatgcacccttaaaagttgcgttaaacaaagtggtcaaacatg 27521564  T
Q  426 agaaaacatgttctgacaatcaacatg 452  Q
    ||||||| |||||||||||||||||||    
T  27521563 agaaaacgtgttctgacaatcaacatg 27521537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 30216029 - 30216106
Alignment:
Q  382 acaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| |||| |||||||| |||| |||  |||||||| |||||||| | |||| |||||||||||||||||||||    
T  30216029 acaagcatccttaaaagctgcgtcaagcaaaatggtcaaatatgagaaagcgtgttttgacaatcaacatgtttttat 30216106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 983072 - 983008
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| |||| |||  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  983072 aaagctgcgtcaagcaaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttat 983008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 459
Target Start/End: Complemental strand, 24527688 - 24527648
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  24527688 aaacatgagaaaacgtgttctgacaatcaacatgcttttat 24527648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 2904467 - 2904424
Alignment:
Q  416 gtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||    
T  2904467 gtcaaacatgagaaagcatgttccgacaatcaacatgattttat 2904424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 5825478 - 5825435
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtggg 354  Q
    |||||||||||| |||||| |||||||||||| |||||||||||    
T  5825478 aaacatgcatgtgtggacttgactggggtttcaccacttgtggg 5825435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 19277393 - 19277352
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  19277393 caaacatgagaaagcgtgttctgacaatcaacatgcttttat 19277352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 21326845 - 21326886
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||| | ||||||||||||||||||| ||||||    
T  21326845 caaacatgagaaagcgtgttctgacaatcaacatgcttttat 21326886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 452
Target Start/End: Complemental strand, 43857081 - 43856940
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||| ||||  |||||| ||| |||||||| ||||||||||||||  | | ||||||||| || || |||||  |||| || |||| ||| |||| ||    
T  43857081 aaacatacatgcgtggacttgacgggggtttcaccacttgtgggattaggggtcggggcttttacagtaggacagacaacattaaaagatgcgtcaatca 43856982  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatg 452  Q
    |  |||  | |||||||||| | |||| ||||||||||||||    
T  43856981 aagtggctagacatgagaaagcgtgttttgacaatcaacatg 43856940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 53619793 - 53619645
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggatt-gagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaac 409  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| || ||| |  |||||||| || || ||||| |||||| | |||||||| |||| |    
T  53619793 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttagag-gtgggggcttttacagtaggacaggcaaccctaaaagctgcgtcaagc 53619695  T
Q  410 aatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||  ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  53619694 aaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttat 53619645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 457
Target Start/End: Complemental strand, 31847294 - 31847148
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||| ||||||| ||||||||||| ||  | |  |||||||| || || ||||| ||| || | |||||||| |||| ||    
T  31847294 aaacatgcatgtgtggacttgactagggtttcaccacttgtgggtttaggggtgggggcttttacagtaggacaggcagccctaaaagctgcgtcaagca 31847195  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgttttt 457  Q
    |  ||||||||||||||||| |||||||||||| |||||||||||||    
T  31847194 aagtggtcaaacatgagaaaccatgttctgacagtcaacatgttttt 31847148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 302 - 447
Target Start/End: Complemental strand, 54927672 - 54927527
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagaga-cggggctttcactgtgggacaagcaaccttcaaagct 400  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||||||||| || || || || |  ||| | |||||||||  ||||| |||||||     
T  54927672 gtaggagggaaacatgcatgtgtggacttgattggggtttccccacttgtggg-tttagggaccgagttttttattgtgggacatacaaccctcaaagcc 54927574  T
Q  401 gcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatca 447  Q
     |||||||||| ||||  ||||||||||||||||||| |||||||||    
T  54927573 acttcaaacaaattggctaaacatgagaaaacatgttatgacaatca 54927527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 450
Target Start/End: Original strand, 12918272 - 12918411
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| || | | |||||| |||||  ||||||||||||| |||  ||||||||| || || |||||| ||||| | |||| ||| |||||||    
T  12918272 aaacatgcatgtgtgtagttgactggagtttcatcacttgtgggattaagattcggggcttttacggtaggacaaacaaccctaaaagttgcgtcaaaca 12918371  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaaca 450  Q
    |  ||||||||||| ||||| | |||||||||||||||||    
T  12918372 aagtggtcaaacataagaaatcgtgttctgacaatcaaca 12918411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 459
Target Start/End: Complemental strand, 24720150 - 24719993
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| |||||||| ||||| | |||||| ||||||| ||||| | ||||||||||||| |  | || |||| |||| || ||||||| || |||| ||||    
T  24720150 gtaggagggaaacgtgcatatgtggacttgactgggatttccactcttgtgggattgata-cctggacttttactgcggaacaagcatccctcaatgctg 24720052  T
Q  402 cttcaaacaatttggtcaaacatga-gaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| ||  |||||||||||||  |||||  |||||||||||||||||||||||||    
T  24720051 cttcaaagaaagtggtcaaacatgataaaaacgcgttctgacaatcaacatgtttttat 24719993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 458
Target Start/End: Original strand, 50000825 - 50000972
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| |   | |  |||||||| || || |||||  || |  | |||||||| |||| ||    
T  50000825 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggttaaggggtgggggcttttacggtaggacagacagctctaaaagctgcgtcaagca 50000924  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgttttta 458  Q
    |  ||||||||||||||||| | ||||||||||||||||||| |||||    
T  50000925 aagtggtcaaacatgagaaagcgtgttctgacaatcaacatgctttta 50000972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 288 - 459
Target Start/End: Complemental strand, 132617 - 132444
Alignment:
Q  288 tggtttacatataagtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtg--ggacaa 385  Q
    |||| |||| ||| |||| ||| ||| |||||||| || ||| |||||||||||| |||||||| |||||  | | |||| |||| || |||  |||||     
T  132617 tggtgtacagatacgtaggaggaaaatatgcatgtgtgaacttgactggggtttcaccacttgttggattaggggtcgggacttttacggtgtaggacag 132518  T
Q  386 gcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||| || | |||||||| |||| |||  |||  |||||||||||| | ||||||||||||||||||| ||||||    
T  132517 gcagccctaaaagctgcgtcaagcaaaatggcaaaacatgagaaatcgtgttctgacaatcaacatgcttttat 132444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 25504500 - 25504354
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| | |||| ||||| |||||| ||||||||||||||  | | | || |||| || ||  |||| |||||| | |||| ||| |||| ||    
T  25504500 aaacatgcatgtatagacttgactgaggtttcaccacttgtgggattaggcgtcaggccttttacggtatgacaggcaaccct-aaagttgcatcaagca 25504402  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | | |||||||||||||||||| |||||| |||||| ||||||||||||    
T  25504401 aat-ggtcaaacatgagaaaacgtgttctaacaatcgacatgtttttat 25504354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Original strand, 54190859 - 54190905
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttatt 460  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||    
T  54190859 tggtcaaacatgagaaaacatattctgacaatttacatgtttttatt 54190905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 30940742 - 30940787
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||    
T  30940742 tggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttat 30940787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 56462113 - 56462154
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| ||| | ||||||||||||||||||||||||||    
T  56462113 caaacatgataaagcgtgttctgacaatcaacatgtttttat 56462154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 12053536 - 12053472
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| ||||||||  | ||||||||||||||| | |||||| |||||||| | ||||||||    
T  12053536 aaagctgcgtcaaacaaagttgtcaaacatgagaaatcgtgttctaacaatcaaaacgtttttat 12053472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 34644773 - 34644625
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| ||  | | ||||||||| || || |||||||||||| | |||| ||| |||||||    
T  34644773 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaaca 34644674  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | ||||||||||| | ||||| ||||||    
T  34644673 aagtggccaaacatgagaaagcgtgttctgacaacctacatgcttttat 34644625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 459
Target Start/End: Complemental strand, 23044018 - 23043936
Alignment:
Q  377 gtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| ||||| |||||||||| |||| |||  ||| |||| ||||||||||| || || |||||||||||| ||||||    
T  23044018 gtgggacaaacaaccctcaaagctgcatcaagcaaagtggccaaatatgagaaaacaagtactcacaatcaacatgcttttat 23043936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 2764583 - 2764538
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  2764583 tggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttat 2764538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 21473103 - 21473062
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  21473103 caaacatgagaaagcgtgttctgacaatcaacatgtttttat 21473062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 31737330 - 31737371
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  31737330 caaacatgagaaaacatattctgacaatcaacatgcttttat 31737371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 19035570 - 19035506
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| |||| |||  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  19035570 aaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 19035506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 453
Target Start/End: Complemental strand, 19035458 - 19035424
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgt 453  Q
    |||||||||||| ||||||||||||||||||||||    
T  19035458 aaacatgagaaagcatgttctgacaatcaacatgt 19035424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 20259800 - 20259845
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||| ||| |||||||| | ||||||||||||||||||||||||||    
T  20259800 tggttaaaaatgagaaagcgtgttctgacaatcaacatgtttttat 20259845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 25375840 - 25375881
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| |||||||||||| || ||||||||||||||||    
T  25375840 caaacatgacaaaacatgttcttaccatcaacatgtttttat 25375881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 29169800 - 29169841
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||| |||||||| ||||||||||||||||||| ||||||    
T  29169800 caaacacgagaaaacgtgttctgacaatcaacatgcttttat 29169841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 50314627 - 50314672
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||| ||||| |||||| |||||||||||| ||||||    
T  50314627 tggtcaaacatgacaaaacttgttctcacaatcaacatgcttttat 50314672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 459
Target Start/End: Original strand, 23484829 - 23484986
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| || ||||||||| |||||||||||||| || | |||| |||| || |||||||||  | || | ||||||     
T  23484829 gtaggaggaaaacatgcatgtgtagacttgattggggtttcaccacttgtgggattaagtgtcgggcctttaacggtgggacaactagccctaaaagcta 23484928  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | ||||||||  ||| |||| |||||||| ||||||||||||||||||||| ||||||    
T  23484929 cgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttat 23484986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 4412966 - 4413114
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||| ||| | |||| |||||||||||| |||||||||||||| || | | |  |||| || || ||||| |||||| | |||||||  |||| ||    
T  4412966 aaacatgcttgtgtagacttgactggggtttcaccacttgtgggattaagtgtcagaccttttaccgtaggacaggcaaccctaaaagctgtgtcaagca 4413065  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  4413066 aagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 4413114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 459
Target Start/End: Original strand, 41867877 - 41867956
Alignment:
Q  380 ggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||| ||| |||| |||||||| |||| |||  ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  41867877 ggacaggcagccttaaaagctgcgtcaagcaaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttat 41867956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 1296034 - 1296098
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| ||||||||  ||| |||||||||||||| ||||||||||||| |||||||||||||    
T  1296034 aaagctgcgtcaaacaaaatggccaaacatgagaaaatatgttctgacaataaacatgtttttat 1296098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 2888616 - 2888575
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  2888616 caaacatgagaaaacgtgttctgacaatcaacatgtttttat 2888575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 5532542 - 5532478
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| |||| |||  ||||||||||||||||||| |||| |||||||||||||| ||||||    
T  5532542 aaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttat 5532478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 28225207 - 28225059
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| || ||||||||| | ||||||||| ||  |||   ||||||| || || |||||| |||| || |||||||| |||| ||    
T  28225207 aaacatgcatgtgtggacttgaatggggtttcactacttgtgggcttaggagttagggcttttacggtaggacaaacaactttaaaagctgcgtcaagca 28225108  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||  |||| |||||||| | | ||||||||||||||||| ||||||    
T  28225107 aagtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttat 28225059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 3968388 - 3968457
Alignment:
Q  390 ccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| || ||||||| |||  |||||||| ||||||||||||||| |||||||||| ||| ||||||    
T  3968388 ccttcaaggccgcttcaagcaaagtggtcaaatatgagaaaacatgttttgacaatcaatatgcttttat 3968457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 448
Target Start/End: Complemental strand, 44686626 - 44686490
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| ||  | | ||||||||| ||  | |||||  ||  | | |||||||  |||| ||    
T  44686626 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtcggggcttttacgataggacagacagtcctaaaagctg-gtcaagca 44686528  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaa 448  Q
    || ||| ||||||||||||| | |||||||||||||||    
T  44686527 atgtggccaaacatgagaaagcgtgttctgacaatcaa 44686490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 27502485 - 27502421
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| |||| |||  ||||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  27502485 aaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttccgacaaacaacatgcttttat 27502421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 357
Target Start/End: Original strand, 18744845 - 18744900
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggatt 357  Q
    |||| ||| |||||||||||| | |||| |||||||||||| ||||||||||||||    
T  18744845 gtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttgtgggatt 18744900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 19161790 - 19161831
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| ||| | ||||||||||||||||||||||||||    
T  19161790 caaacatgaaaaagcgtgttctgacaatcaacatgtttttat 19161831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 44720423 - 44720382
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| ||||| |||| |||||||||||||||||||||    
T  44720423 caaacatgaaaaaacgtgttatgacaatcaacatgtttttat 44720382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 11921218 - 11921258
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||| ||||||| |||||||||||||||||| |||||||    
T  11921218 aaacattagaaaacgtgttctgacaatcaacatatttttat 11921258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 33612555 - 33612595
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  33612555 aaacatgagaaaacgtgttttgacaatcaacatgattttat 33612595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 24125235 - 24125087
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| | |||| |||||||||||| ||||||||||||||  | | || | |||| || |||||||||||| || | |||||||| |||| ||    
T  24125235 aaacatgcatgtgtagacttgactggggtttcaccacttgtgggattatgcgtcgtgccttttacggtgggacaagcagccctaaaagctgcatcaagca 24125136  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | || |||||||||||||||| ||||||    
T  24125135 aaatggccaaacatgagaaagcgtgctctgacaatcaacatgcttttat 24125087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 459
Target Start/End: Complemental strand, 500443 - 500286
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| || || |||||| ||||||||||||||  | | |||| |||| || || ||||   || || | |||| ||    
T  500443 gtagaaggaaaacatgcatgtgtagacttgagtgaggtttcaccacttgtgggattaggtgtcgggccttttacggtaggaccgacagccctaaaagttg 500344  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | |||| |||  ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  500343 cgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttat 500286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 10556296 - 10556341
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||    
T  10556296 tggtcaaacatgagaaaacatattctgaaaatcaacatgtttttat 10556341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 459
Target Start/End: Original strand, 35739878 - 35740034
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| |||||| |||||||||||| ||||| |||||||| || | |||| |||| || || |||||  || || | |||| ||    
T  35739878 gtaggaggaaaacatgcatgtgtggacttgactggggtttcaccactagtgggattaag-gtcgggccttttacggtaggacagacatccctaaaagttg 35739976  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
      | || |||  ||| ||||||||||||| |  |||||||||||||||||||||||||    
T  35739977 tgttaagcaaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttat 35740034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 10189645 - 10189602
Alignment:
Q  416 gtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| |||||| ||||||||||||||||||||||||||||    
T  10189645 gtcaaacaagagaaagcatgttctgacaatcaacatgtttttat 10189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 39434874 - 39434726
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| || ||| |||||||||||| ||||||||||| ||  | |  | |||||| || || ||||| | | |  | |||| ||| |||| ||    
T  39434874 aaacatgcatgtgtgtacttgactggggtttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagca 39434775  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  39434774 aagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 39434726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 459
Target Start/End: Complemental strand, 38815407 - 38815353
Alignment:
Q  405 caaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  38815407 caaacaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 38815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 416 - 452
Target Start/End: Original strand, 27422150 - 27422186
Alignment:
Q  416 gtcaaacatgagaaaacatgttctgacaatcaacatg 452  Q
    ||||||||||||||||||| || ||||||||||||||    
T  27422150 gtcaaacatgagaaaacatattttgacaatcaacatg 27422186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 35310655 - 35310507
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| || ||||||||| ||||||||||| ||  | | ||||||||| || || |||||  ||||| | |||| ||| |||| ||    
T  35310655 aaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacagacaaccctaaaagatgcgtcaagca 35310556  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  35310555 aagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttat 35310507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 459
Target Start/End: Complemental strand, 8859066 - 8858975
Alignment:
Q  368 gctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||| || |||||||||||||||  |||| |||| |||| |||  | ||||||||||||||| | ||||||||||||||||||||||||||    
T  8859066 gcttttacggtgggacaagcaacccacaaaactgcgtcaagcaaagtagtcaaacatgagaaagcgtgttctgacaatcaacatgtttttat 8858975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 457
Target Start/End: Original strand, 33691955 - 33692101
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| ||||| |||||| ||||||||||| ||  | | ||||||||| || || ||||| |||  | | |||||||| |||| ||    
T  33691955 aaacatgcatgtgtggacttgactgaggtttcaccacttgtgggtttaggggtcggggcttttacggtaggacaggcaggcctaaaagctgcgtcaagca 33692054  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgttttt 457  Q
    |  ||| ||||||||| ||||| |||| |||||||||||||| ||||    
T  33692055 aagtggccaaacatgacaaaacgtgttatgacaatcaacatgctttt 33692101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 459
Target Start/End: Original strand, 32269688 - 32269845
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| |||||||||||| |||||| ||| |||  | | |||| |||| |  || ||||| |||||| | |||||||    
T  32269688 gtaggaggaaaacatgcatgtgtagacttgactggggtttcaccacttctggaattaggtgtcgggccttttatggtaggacatgcaaccctaaaagctg 32269787  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | |||| |||  |||||||||||||||||   ||||||||||||||||| | ||||||    
T  32269788 catcaaccaaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttat 32269845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 451
Target Start/End: Complemental strand, 27336900 - 27336760
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||||||||||| ||||||||||| ||  | |  |||||||| ||  | |||||  || || | |||| ||| |||| ||    
T  27336900 aaacatgcatgtgtggacttgactggggtttcaccacttgtgggtttaggggtgggggcttttacaataggacagacagccctaaaagttgcgtcaagca 27336801  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacat 451  Q
    |  ||||||||||||||||| | ||||||||||||||||||    
T  27336800 aagtggtcaaacatgagaaatcgtgttctgacaatcaacat 27336760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 3114116 - 3114211
Alignment:
Q  364 cggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||| || || ||||| ||| || | |||| ||| ||||||||  ||| ||||||||||||| |||||||||||| |||||||||||||||    
T  3114116 cggggcttttacggtaggacaggcagccctaaaagttgcatcaaacaaagtggccaaacatgagaaagcatgttctgacagtcaacatgtttttat 3114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 15292019 - 15292074
Alignment:
Q  404 tcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||  ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  15292019 tcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttat 15292074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 43129638 - 43129595
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgttttt 457  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  43129638 tggtcaaacatgagaaaacgtgttctgacaatcaacatgttttt 43129595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 25663016 - 25663080
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| ||||||||  ||| ||||||||||||| | |||||||| |||||||||||||||||    
T  25663016 aaagctgcatcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttat 25663080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 459
Target Start/End: Complemental strand, 8100737 - 8100611
Alignment:
Q  333 ctggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaac 432  Q
    |||||||||| |||||||||||||| |||| |||| |||| |  || ||||| ||| || | || ||||| ||||  ||  |||||||||||||||||||    
T  8100737 ctggggtttcaccacttgtgggattaagagtcgggactttaatagtaggacatgcatccctaaacgctgcatcaagtaaaatggtcaaacatgagaaaac 8100638  T
Q  433 atgttctgacaatcaacatgtttttat 459  Q
     |||| |||||||  ||||| ||||||    
T  8100637 gtgttgtgacaatttacatgcttttat 8100611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 37873645 - 37873686
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||| | ||||||||||||||||||||||||||    
T  37873645 caaacatgagaaagcgtgttctgacaatcaacatgtttttat 37873686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 42921801 - 42921756
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||    
T  42921801 tggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttat 42921756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 459
Target Start/End: Original strand, 13166865 - 13166958
Alignment:
Q  366 gggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| || ||||||||  ||||| | ||| |||| |||| |||  |||  |||||||||||| | ||||||||||||||||||| ||||||    
T  13166865 gggcttttacggtgggacagacaaccctaaaatctgcgtcaagcaaagtggctaaacatgagaaagcgtgttctgacaatcaacatgcttttat 13166958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 35456060 - 35456015
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||    
T  35456060 tggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttat 35456015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Complemental strand, 7143805 - 7143765
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||||||| |||| | |||||||||||||||||||    
T  7143805 aaacatgagaaaacgtgttttaacaatcaacatgtttttat 7143765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 16257 - 16193
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||| ||||||||  ||| |||||||||||||||||||||||||||| |||||||||||||    
T  16257 aaagctgcgtcaaacaaaatggccaaacatgagaaaacatgttctgacaataaacatgtttttat 16193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 459
Target Start/End: Original strand, 17249209 - 17249353
Alignment:
Q  315 atgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaattt 414  Q
    |||||||| |||||| |||||||||||| ||| ||||||| ||  |||  || ||||| || || |||||| ||||| | |||| ||| ||||||||  |    
T  17249209 atgcatgtgtggacttgactggggtttcaccatttgtgggtttcggagtgggcgcttttacggtaggacaaacaaccctaaaagttgcgtcaaacaaagt 17249308  T
Q  415 ggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    || |||||||||||||   ||||||||||||||||||| ||||||    
T  17249309 ggccaaacatgagaaagtgtgttctgacaatcaacatgcttttat 17249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 459
Target Start/End: Original strand, 357617 - 357765
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| |||||| ||||| ||||||||||| ||  | | ||| ||||| || || ||||| ||| || | |||||| | |||| ||    
T  357617 aaacatgcatgtgtggacttgactggagtttcaccacttgtgggtttaggggtcggtgcttttacggtaggacaggcagccctaaaagcttcgtcaagca 357716  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  ||| ||||||||||||| | |||||||||||| |||||| ||||||    
T  357717 aagtggccaaacatgagaaagcgtgttctgacaatgaacatgcttttat 357765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 459
Target Start/End: Complemental strand, 34304703 - 34304555
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaaca 410  Q
    |||||||||||| |||||| || ||||||||| ||||||||||| ||  ||| ||||||||| || || |||||   | || | |||||||| |||| ||    
T  34304703 aaacatgcatgtgtggacttgattggggtttcaccacttgtgggtttaggagtcggggcttttacggttggacagctagccctaaaagctgcgtcaagca 34304604  T
Q  411 atttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |  |   ||||||||||||| | ||||||||||||||||||| ||||||    
T  34304603 aaataaccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 34304555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 45661 - 45726
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttatt 460  Q
    |||||||| |||| |||  || |||||||||||||||| ||||||||||||||||||| |||||||    
T  45661 aaagctgcatcaagcaaagtgatcaaacatgagaaaacgtgttctgacaatcaacatgcttttatt 45726  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 459
Target Start/End: Complemental strand, 959796 - 959639
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| |||||| || ||  ||||| |||||| |||||||  | | |||| |||| || || |||||| ||||| | |||| ||    
T  959796 gtaggaggaaaacatgcatgtgtggacttgattgaagtttcaccacttatgggattaggtgtcgggccttttacggtaggacaaacaaccctaaaagttg 959697  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
      |||| |||  |||  || ||||||||||| |||||||||||||||||||| |||||    
T  959696 tgtcaagcaaagtggctaaccatgagaaaacgtgttctgacaatcaacatgtctttat 959639  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 459
Target Start/End: Complemental strand, 3715031 - 3714976
Alignment:
Q  404 tcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||  |||| |||||||||||||| |||||| ||||| |||||||||||||    
T  3715031 tcaaacaaaatggttaaacatgagaaaacgtgttctcacaattaacatgtttttat 3714976  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Complemental strand, 24016439 - 24016396
Alignment:
Q  416 gtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||| | |||||| |||||||||||||||||||    
T  24016439 gtcaaacatgagaaagcttgttctcacaatcaacatgtttttat 24016396  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 357
Target Start/End: Original strand, 4206496 - 4206542
Alignment:
Q  311 aaacatgcatgtttggactggactggggtttccccacttgtgggatt 357  Q
    |||||||||||| | |||| |||||||||||| ||||||||||||||    
T  4206496 aaacatgcatgtgtagacttgactggggtttcaccacttgtgggatt 4206542  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 448
Target Start/End: Original strand, 28008907 - 28009024
Alignment:
Q  331 gactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaa 430  Q
    |||||| ||||| ||||| ||||||||  | | ||||||||| || || ||||| |||||| | |||||| | |||| |||   ||||||||||||||||    
T  28008907 gactggagtttcaccactcgtgggattaggggtcggggcttttacggtaggacatgcaaccctaaaagctacgtcaagcaaagcggtcaaacatgagaaa 28009006  T
Q  431 acatgttctgacaatcaa 448  Q
     | |||||| ||||||||    
T  28009007 gcttgttctaacaatcaa 28009024  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 459
Target Start/End: Original strand, 4165930 - 4165970
Alignment:
Q  419 aaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  4165930 aaacatgagaaagcgtgttctgacaatcaacatgcttttat 4165970  T

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Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 367 - 457
Target Start/End: Complemental strand, 37481 - 37391
Alignment:
Q  367 ggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgttttt 457  Q
    |||||| | ||||||||| ||| |  ||||||| |||||||||||  || |||||||||||||| ||| ||||||||||||||||||||||    
T  37481 ggcttttattgtgggacacgcagctctcaaagcagcttcaaacaaaatgatcaaacatgagaaagcatattctgacaatcaacatgttttt 37391  T

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Target: scaffold1768 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 428
Target Start/End: Original strand, 75 - 201
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| |||||||||||| |||||||||||||| || | |||| |||| ||||| ||||| ||| || | ||| |||    
T  75 gtaggaggaaaacatgcatgtatagacttgactggggtttcaccacttgtgggattaagtgtcgggccttttactgtaggacaggcagccctaaaaactg 174  T
Q  402 cttcaaacaatttggtcaaacatgaga 428  Q
    | |||| |||  ||| |||||||||||    
T  175 cgtcaagcaaagtggccaaacatgaga 201  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 357
Target Start/End: Complemental strand, 7901074 - 7901019
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggatt 357  Q
    |||| ||| |||||||||||| |||||| |||||||||||| ||||||||||||||    
T  7901074 gtaggaggaaaacatgcatgtgtggacttgactggggtttcaccacttgtgggatt 7901019  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 459
Target Start/End: Complemental strand, 13582725 - 13582568
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||| | |||| ||| | ||||||  |||||||||||||  | | | || |||| || || ||||||||| || | |||||||    
T  13582725 gtaggaggaaaacatgcatgtgtagacttgaccgaggtttcaacacttgtgggattaggtgtcaggccttttaccgtaggacaagcagccctaaaagctg 13582626  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | |||| |||  || |||||||| |||||   |||||||||||||||| |||||||||    
T  13582625 cgtcaatcaaagtgatcaaacataagaaagtgtgttctgacaatcaacgtgtttttat 13582568  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 459
Target Start/End: Original strand, 37133002 - 37133047
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||    
T  37133002 tggttaaacatgagaaagcgtgttctgacaatcaacatgtttttat 37133047  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 459
Target Start/End: Original strand, 39583120 - 39583277
Alignment:
Q  302 gtagtagggaaacatgcatgtttggactggactggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctg 401  Q
    |||| ||| |||||||||||  |||||| ||||  |||||  |||||||||||||| || | |||| | || |  || ||| | ||| || | |||||||    
T  39583120 gtaggaggaaaacatgcatgcgtggacttgacttaggttttaccacttgtgggattaagggtcgggccatttatggtaggataggcagccctaaaagctg 39583219  T
Q  402 cttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    | |||| |||  ||| ||||||||||||| | ||||||||||||||||||| ||||||    
T  39583220 cgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 39583277  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 52741496 - 52741560
Alignment:
Q  395 aaagctgcttcaaacaatttggtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||  |||||||| |||  ||||||||||||| | ||||||||||||||||||| ||||||    
T  52741496 aaagctgagtcaaacaaattgaccaaacatgagaaagcgtgttctgacaatcaacatgcttttat 52741560  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 457
Target Start/End: Original strand, 35484695 - 35484738
Alignment:
Q  414 tggtcaaacatgagaaaacatgttctgacaatcaacatgttttt 457  Q
    |||||||||||||||||| ||||||  |||||||||||||||||    
T  35484695 tggtcaaacatgagaaaatatgttccaacaatcaacatgttttt 35484738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 38670885 - 38670928
Alignment:
Q  416 gtcaaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||    
T  38670885 gtcaaacatgagaaagcgtgttctgacaatcaacatgcttttat 38670928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 26772858 - 26772817
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||    
T  26772858 caaacatcagaaaacgtgttctgacaatcaacatgcttttat 26772817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 37992432 - 37992391
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    |||||||||| || ||||||||||||||||||||| ||||||    
T  37992432 caaacatgaggaagcatgttctgacaatcaacatgattttat 37992391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 46940777 - 46940818
Alignment:
Q  418 caaacatgagaaaacatgttctgacaatcaacatgtttttat 459  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||    
T  46940777 caaacattagaaaacatgttccgacaatcaacatgcttttat 46940818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 459
Target Start/End: Complemental strand, 33433 - 33309
Alignment:
Q  334 tggggtttccccacttgtgggattgagagacggggctttcactgtgggacaagcaaccttcaaagctgcttcaaacaatttggtcaaacatgagaaaaca 433  Q
    ||||||||| |||||| |||||||  | | |||| |||| || || ||||| |||||||| ||||  || |||| |||  |||  |||||||||||| |     
T  33433 tggggtttcaccacttatgggattaggtgtcgggccttttacggtaggacaggcaacctt-aaagtggcatcaagcaaagtggctaaacatgagaaagcg 33335  T
Q  434 tgttctgacaatcaacatgtttttat 459  Q
    ||||||||||||||||||||||||||    
T  33334 tgttctgacaatcaacatgtttttat 33309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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