View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_19 (Length: 462)
Name: NF10923_high_19
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 45658825 - 45659249
Alignment:
| Q |
17 |
cacagacagaggcaaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagaca |
116 |
Q |
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| T |
45658825 |
cacagacagaggcaaacaattttgagctatttcttcacaaacaccatttcatttgaactttactattcttgtctaaaacttaactctcattatcgagaca |
45658924 |
T |
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| Q |
117 |
atggtaaggttctactcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcag |
216 |
Q |
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| T |
45658925 |
atggtaaggttctactcattcatctcactcatttttctaaccttagcttgtttctatatacatatagttgatgagtttcaaatctttgtaatacaggcag |
45659024 |
T |
|
| Q |
217 |
atcaagaggaaactgaagaactcaagcttctcactgaatggaagagaaagaaaggtggattcagggcttctatgtttatttttggtaagctgaagtataa |
316 |
Q |
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| T |
45659025 |
atcaagaggaaactgaagaactcaagcttctcactgaatggaagagaaagaaaggtggatttagggcttctatgtttatttttggtaagctgaagtataa |
45659124 |
T |
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| Q |
317 |
acaaaaactctttgttggttctgttttttgctgatttgaa-tttgatgcaaaatatgttcttgttttttgatgtagtattgtcagcattggacaacatgg |
415 |
Q |
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| T |
45659125 |
acaaaaactctttgttggttctgttttttgctgatttgaattttgatgcaaactatgttcttgttttttgatgtagtattgtcagcattggacaacatgg |
45659224 |
T |
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| Q |
416 |
gttttgtggcaaacatggttagctt |
440 |
Q |
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| T |
45659225 |
gttttgtggcaaacatggttagctt |
45659249 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 37984345 - 37984292
Alignment:
| Q |
387 |
tgtagtattgtcagcattggacaacatgggttttgtggcaaacatggttagctt |
440 |
Q |
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|||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| |
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| T |
37984345 |
tgtagttttgtcagcattggataacatgggttttgtgacaaacatggtgagctt |
37984292 |
T |
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