View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_high_2 (Length: 843)
Name: NF10923_high_2
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 8 - 806
Target Start/End: Original strand, 44763784 - 44764582
Alignment:
| Q |
8 |
aggagcagagatcattccatacatggcattacgaatttgaaactttgtagttggtaatggcagcaattttaatacaataaatgatattgcgaatatgaca |
107 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763784 |
aggagcagagaccattctatacatggcattacgaatttgaaactttgtagttggtaatggcagcaattttaatacaataaatgatattgcgaatatgaca |
44763883 |
T |
|
| Q |
108 |
ttcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcataattccagcaatggcataagtaagtagaagaaacctgagaatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763884 |
ttcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcacaattccagcaatggcataagtaagtagaagaaacctgagaatt |
44763983 |
T |
|
| Q |
208 |
attccgaacgcccaaattttgaagcacatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaata |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44763984 |
attccgaacgcccaaattttgaagcacatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctcctgcaaata |
44764083 |
T |
|
| Q |
308 |
aaatgagacgaatttacaaaataactttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgcataaaataagaaatcaaaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44764084 |
aaatgagacgaatttacaaaataactttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgtataaaataagaaatcaaaat |
44764183 |
T |
|
| Q |
408 |
attaaaacagaacccaatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtt |
507 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44764184 |
attaaaacaaaacccaatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtt |
44764283 |
T |
|
| Q |
508 |
tcaaatccttgagcgttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44764284 |
tcaaatccttgagcgttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtcc |
44764383 |
T |
|
| Q |
608 |
aatgagagtttccacatcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcaccttcttcaaactg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
44764384 |
aatgagagtttccacatcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcgccttcttcaaaccg |
44764483 |
T |
|
| Q |
708 |
ctcttgtattccgcaccttctcccatctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctccttaatttttaatatcaatat |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44764484 |
ctcttgtattccgcaccttctcccatctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctccttaatttttaatatcaatat |
44764582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 422 - 804
Target Start/End: Original strand, 28357697 - 28358077
Alignment:
| Q |
422 |
caatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagc |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28357697 |
caatgaatgagaaactgaccaagaaatatggcggtgacccatactagattgttccatgtaattaaccttcttcttgatagcaagtttcaaatccttgagc |
28357796 |
T |
|
| Q |
522 |
gttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttcca |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28357797 |
gttgccgtattcattagaatcacatcaaacgaggttgtatccaatttcaaaactgtaattcgcattgcactacccaattcgagtccaatgagagtttcca |
28357896 |
T |
|
| Q |
622 |
catcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcaccttcttcaaactgctcttgtattccgc |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
28357897 |
catcttccagggttggattcttcggtacatctgcgagtattggatcctccaataatgctttcaacaccttcgccttcttcaaaccgctcttgtattccgc |
28357996 |
T |
|
| Q |
722 |
accttctcccatctcatcgcaaaataaccaaattcaaacgcaaaaattattttgatatgagctccttaatttttaatatcaat |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28357997 |
accttctcccatctcatcgcaaaataaccaaattcaaacgc--aaattattttgatatgagctccttaatttttaatatcaat |
28358077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 99 - 323
Target Start/End: Original strand, 28357247 - 28357471
Alignment:
| Q |
99 |
aatatgacattcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcataattccagcaatggcataagtaagtagaagaaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28357247 |
aatatgacattcttttggtcacatgatcaatgcagactaaaatactagtaatttattctatttcacaattccagcaatggcataagtaagtagaagaaac |
28357346 |
T |
|
| Q |
199 |
ctgagaattattccgaacgcccaaattttgaagcacatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctc |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28357347 |
ctgagaattattccgaacgcccaaattttgaagcacatcatcatcgttaaggagcttgttgttatcgaatgacaaacaataattagcccaaacacttctc |
28357446 |
T |
|
| Q |
299 |
ctgcaaataaaatgagacgaattta |
323 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
28357447 |
ctgcaaataaaatgagatgaattta |
28357471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 325 - 397
Target Start/End: Original strand, 28357588 - 28357659
Alignment:
| Q |
325 |
aaaataactttacactgtcggtgtgtaataattaaattgaaatcatattacaccagtttttgcataaaataag |
397 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28357588 |
aaaataacttta-actgttggtgtgtaataattaaattcaaatcatattacaccagtttttgcataaaataag |
28357659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University