View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_20 (Length: 460)
Name: NF10923_high_20
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 384 - 460
Target Start/End: Original strand, 50247709 - 50247785
Alignment:
| Q |
384 |
gtgtgaaggatgttttatatagtcaatagacattatactttattgacttgaggccgacaaacattacctatgcttct |
460 |
Q |
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| T |
50247709 |
gtgtgtaggatgttttatatagtcactagacattatactttattgacttgaggccgacaaacattacttatgcttct |
50247785 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 434
Target Start/End: Complemental strand, 50247673 - 50247637
Alignment:
| Q |
398 |
ttatatagtcaatagacattatactttattgacttga |
434 |
Q |
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| T |
50247673 |
ttatatagtcactagacattatactttattgacttga |
50247637 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 46885053 - 46885182
Alignment:
| Q |
12 |
atcatataccatgaaagtttctgaaaagtttaa--tgtttgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgt |
109 |
Q |
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| T |
46885053 |
atcatatcccatgaaagtttttgagaagttgcaattgtgtgatttgaacaatttcatttagtatcctataaaaaataaattttcaaatggcatgtgtcat |
46885152 |
T |
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| Q |
110 |
gcagttttggtgtca-aattgataagagaa |
138 |
Q |
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| T |
46885153 |
gtagttttggtgtcacaattgataagagaa |
46885182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 37685242 - 37685152
Alignment:
| Q |
49 |
tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa |
138 |
Q |
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| T |
37685242 |
tgatttcaacaagttcatttagtattatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaa |
37685152 |
T |
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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 46885285 - 46885336
Alignment:
| Q |
259 |
caaataagtatgggtgttatttt-tggttgattagaacatgattaaatgaat |
309 |
Q |
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| T |
46885285 |
caaataagtatgggtattattttttggttgattataacatgattaaatgaat |
46885336 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 7498519 - 7498609
Alignment:
| Q |
49 |
tgatttcaaccatttcatttattattctatgaaatttaaattttcaaatggtatatgtcgtgcagttttggtgtca-aattgataagagaa |
138 |
Q |
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| T |
7498519 |
tgatttcaacaagttcatttagtatcatataaaaattaaattttcaaatggcatgtgtcatgctgttttggtgtcacaattgataagagaa |
7498609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 21546088 - 21546021
Alignment:
| Q |
246 |
ggagaagcagccacaaataagtatgggtgttattttt-ggttgattagaacatgattaaatgaatatt |
312 |
Q |
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| T |
21546088 |
ggagaagtagccacaaatatgtatgagtactattttttggttgattataacatgattaaatgaatatt |
21546021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 433
Target Start/End: Original strand, 7498691 - 7498763
Alignment:
| Q |
361 |
gaggcttattttaattttgcttcgtgtgaaggatgttttatatagtcaatagacattatactttattgacttg |
433 |
Q |
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| T |
7498691 |
gaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatgctttattgacttg |
7498763 |
T |
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