View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_24 (Length: 432)
Name: NF10923_high_24
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 9114607 - 9114189
Alignment:
| Q |
1 |
aaaggcatacataattactactaccaatgttcaaagagacatcatactaataatagagttttgaaatcatagataccaacccatttagttcacaaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9114607 |
aaaggcatacataattactactaccaatgttcaaagagacatcatactaataatagagttttgaaatcatagataccaacccatttagttcacaaacatt |
9114508 |
T |
|
| Q |
101 |
agggtatgaatctcataaataagcctnnnnnnnttacacaaacaattacataaacttcaacataaaagttaccaccaaccaatcaccttaagaaatttca |
200 |
Q |
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| T |
9114507 |
agggtatgaatctcataaataagcctaaaaaaattacacaaacaattacataaacttcaacataaaagttaccaccaaccaatcaccttaagaaatttca |
9114408 |
T |
|
| Q |
201 |
acatttaataattagccacttatcaacatctccaagttgaaactgagatgagttctttcctctgccagcatagcataagagaggaaggctttctttccac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9114407 |
acatttaataattagccacttatcaacatctccaagttgaaactgagatgagttctttcctctgccagcatagcacaagagaggaaggctttctttccac |
9114308 |
T |
|
| Q |
301 |
ttgaaatcctctcacaggtgccctttgaaccaaacactcggcttgagcttccgtgaagttgctgaatgagaagggagagaaaccagactgaagaaacatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9114307 |
ttgaaatcctctcacaggtgccctttgaaccaaacactcggcttgagcttccgtgaagttgctgaatgagaagggagagaaaccggactgaagaaacatg |
9114208 |
T |
|
| Q |
401 |
ttcctccatggaggtaatt |
419 |
Q |
| |
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||||||||||||||||||| |
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| T |
9114207 |
ttcctccatggaggtaatt |
9114189 |
T |
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