View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_27 (Length: 416)
Name: NF10923_high_27
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 49445925 - 49445510
Alignment:
| Q |
1 |
tctgtaatgtggagtttctctgcagacaaatagacgaggtttgaattttactatgaatatgttgctaagtaaaagcactaatcgaaaggagatgaaaaac |
100 |
Q |
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| T |
49445925 |
tctgtaatgtggagtttctctgcatacaaatagacgaggtttgaattttactatgaatatgttgctacggaaaaacactaatcgaaaggagatgaaaaac |
49445826 |
T |
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| Q |
101 |
ctgattggtgtgtattttcgattatgccttgttttgataattttcccttatttctgagtgtttgtctttctacattgttgtttagatgtatcgccctcat |
200 |
Q |
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| T |
49445825 |
ctgattggtgtgtattttcgattatgccttgttttggtaattttcccttatttctgagtgtttgtctttctacattgttgtttagatgtatcgccctcat |
49445726 |
T |
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| Q |
201 |
gaaaagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgtcactgcccaaagc |
300 |
Q |
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| T |
49445725 |
gacgagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgtcactgcccaaagc |
49445626 |
T |
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| Q |
301 |
ttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaattttattttatc |
400 |
Q |
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| T |
49445625 |
ttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaattttattttatc |
49445526 |
T |
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| Q |
401 |
attattaataggccac |
416 |
Q |
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| T |
49445525 |
attattaataggccac |
49445510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 300 - 394
Target Start/End: Original strand, 49415800 - 49415894
Alignment:
| Q |
300 |
cttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaattttat |
394 |
Q |
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| T |
49415800 |
cttcaaaatgttgagcttagtgaggtttgttaagtttaggggtcatatctgatttatcatttcttaacatgcctttgtgatttattttattttat |
49415894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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