View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_36 (Length: 336)
Name: NF10923_high_36
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 41070564 - 41070257
Alignment:
| Q |
20 |
tgctctaccatggatcatatctctagcaggcccaataaacaaggcctaatatagttcacttacatgtattaaatagaataaggatgaacgtttactacga |
119 |
Q |
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| T |
41070564 |
tgctctaccatggatcatatctctagcaggcccaataaacaaggcctaatatagttcacttacatgtattaaatagaataaggatgaacgtttactacga |
41070465 |
T |
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| Q |
120 |
ttcgattctttatgttggattaccctgggagagactagcctctctaatttttagaggaattgttaaatcgcagcagttaatttattaatcatgtttacat |
219 |
Q |
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| T |
41070464 |
ttcgattctttatgttggattaccctgggagagactaggctctctaatttctagaggaattgttaaattgcagcagttaatttattaattatgtttacat |
41070365 |
T |
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| Q |
220 |
catgttgtaattcccctgttgtgtaaccactctgttggaaagttatccagagaagttcaataataattcaagtaccatctccataattctatctattctt |
319 |
Q |
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| T |
41070364 |
catgttgtaattcccctgttgtgtaaccactctgttggaaagttatccagagaagttcaataataattcaagtaccatctccataattctatctattcct |
41070265 |
T |
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| Q |
320 |
attcatct |
327 |
Q |
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|||||||| |
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| T |
41070264 |
attcatct |
41070257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 29108271 - 29108188
Alignment:
| Q |
159 |
ctctctaatttttagaggaattgttaaatcgcagcagttaatttattaatcatgtttacatcatgttgtaattcccctgttgtgtaac |
246 |
Q |
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| T |
29108271 |
ctctctaattcttaaatgaattgttagtttgcagaagttaatttatta----tgtttacagcattttgtgattcccctgttgtgtaac |
29108188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 23349289 - 23349249
Alignment:
| Q |
61 |
aggcctaatatagttcacttacatgtattaaatagaataag |
101 |
Q |
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| T |
23349289 |
aggcccaatatagtttatttacatgtattaaatagaataag |
23349249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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