View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_45 (Length: 305)
Name: NF10923_high_45
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 37626946 - 37627223
Alignment:
| Q |
17 |
caaatgatgtatgccaagaatgcaacaatttccctgagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggact |
116 |
Q |
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| T |
37626946 |
caaatgatgtatgccaagaatgcaacaatttcccttagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggact |
37627045 |
T |
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| Q |
117 |
tattgaaagactaagttttgcaagagataggccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaa |
216 |
Q |
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| T |
37627046 |
tattgaaagactaagttttgcaagagatagaccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaa |
37627145 |
T |
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| Q |
217 |
cttacaaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttctt |
294 |
Q |
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| T |
37627146 |
cttacaaaaaccatttgcattttggatgttattgatgacatctttgacaattatggtacattagaggatcttgttctt |
37627223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 53 - 294
Target Start/End: Original strand, 37618569 - 37618809
Alignment:
| Q |
53 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
152 |
Q |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
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| Q |
153 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgat |
252 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggat |
37618767 |
T |
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| Q |
253 |
gacatctttgacaattatggtacattagaggatcttgttctt |
294 |
Q |
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| T |
37618768 |
gatatctttgacacttatggaacattagatgaacttgttctt |
37618809 |
T |
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