View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10923_high_55 (Length: 253)

Name: NF10923_high_55
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10923_high_55
NF10923_high_55
[»] chr1 (3 HSPs)
chr1 (17-253)||(18344933-18345169)
chr1 (28-253)||(18339786-18340011)
chr1 (73-253)||(18303685-18303865)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 18344933 - 18345169
Alignment:
Q  17 agacagcaccggtccaattaactctagtcagtgtaaaaccagtataccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctgggta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18344933 agacagcaccggtccaattaactctagtcagtgtaaaaccagtacaccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctggata 18345032  T
Q  117 acaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18345033 acaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacctttgtatgtttccggttcaagataaaaaattgt 18345132  T
Q  217 gaaccaacccgaaaatcctcaaatggaacctccggca 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  18345133 gaaccaacccgaaaatcctcaaatggaacctccggca 18345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 253
Target Start/End: Original strand, 18339786 - 18340011
Alignment:
Q  28 gtccaattaactctagtcagtgtaaaaccagtataccccttcaaatcctccattgatagaagagtcgaaaaataatgctcctctgggtaacaataatact 127  Q
    |||||||||||||| |||||||||||||||||| |||| |||| ||||||||| || | |||||| | |||||||||||| ||||| |||||| ||| |     
T  18339786 gtccaattaactctcgtcagtgtaaaaccagtacacccattcagatcctccatagacaaaagagtgggaaaataatgctcttctggataacaagaatcca 18339885  T
Q  128 tatttgtacatggaatctgaaacttgttccatagcttttgatctctcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccg 227  Q
     ||||  ||| |||||| ||||||| ||||||||||| | |||||||| |||||| |||| ||| ||||  |||||||||||||| || |||||||||||    
T  18339886 aatttacacaaggaatccgaaacttcttccatagcttataatctctcaccacaacctttgcatgcttcctattcaagataaaaaactgcgaaccaacccg 18339985  T
Q  228 aaaatcctcaaatggaacctccggca 253  Q
    ||||||||||||||||||||||||||    
T  18339986 aaaatcctcaaatggaacctccggca 18340011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 253
Target Start/End: Complemental strand, 18303865 - 18303685
Alignment:
Q  73 tcctccattgatagaagagtcgaaaaataatgctcctctgggtaacaataatacttatttgtacatggaatctgaaacttgttccatagcttttgatctc 172  Q
    |||||||| ||||||||||||| ||| |||||||| || ||||||||  ||||| ||| | ||||||||||| ||||||| ||||| | |||||||||||    
T  18303865 tcctccatcgatagaagagtcggaaagtaatgctcttccgggtaacaggaatacgtatctatacatggaatccgaaacttcttccacaacttttgatctc 18303766  T
Q  173 tcaacacaacatttgtatgtttccggttcaagataaaaaattgtgaaccaacccgaaaatcctcaaatggaacctccggca 253  Q
     ||  ||||| |||| |||||||||||||| |||||| ||||| || ||    ||||||||||  |||| |||||||||||    
T  18303765 gcagaacaacctttgcatgtttccggttcaggataaagaattgcgagcctttgcgaaaatccttgaatgaaacctccggca 18303685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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