View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10923_high_66 (Length: 228)
Name: NF10923_high_66
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_66 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 40520257 - 40520450
Alignment:
| Q |
20 |
gtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaagctacataaataatcagtagtgagataattgttaccttggaaaatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40520257 |
gtaatcacatgtgtcagtgtcgaagcaatatacattcagtcaaatgtgtgaaagctacataaataatcagtagtgagataattgttaccttggaaaatgg |
40520356 |
T |
|
| Q |
120 |
ctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttccagctccatcaagaaaaccagtttctgtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40520357 |
ctcagccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttccagctccatcaagaaaaccagtttctgtg |
40520450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 213
Target Start/End: Original strand, 40511570 - 40511689
Alignment:
| Q |
100 |
attgttaccttggaaaatggctca------gccacagaagcaaaactcatcagttctatggctgcaatggctcctgcaattgctccttttccagctccat |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
40511570 |
attgttaccttggaaaatggctcacccacggccacataagcaaaactcataaattctatggctgcaatggctcctgcaatcgctcctttgccagctccat |
40511669 |
T |
|
| Q |
194 |
caagaaaaccagtttctgtg |
213 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
40511670 |
caagaaaaccaacttctgtg |
40511689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University