View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10923_high_70 (Length: 214)
Name: NF10923_high_70
Description: NF10923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10923_high_70 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 28666988 - 28667201
Alignment:
| Q |
1 |
aacagttaacaaatctgacctttgtttcttttcatcaacttccaaagatagttccttttttctagtccttatgacattcattgcaaattcatcaacccct |
100 |
Q |
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| T |
28666988 |
aacagttaacaaatctgacctttgtttcttttcatcaacttccaaagatagttccttttttctagtccttatgacattcattgcaaattcatcaacccct |
28667087 |
T |
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| Q |
101 |
ttaattgatttcttgagttttctttctacacctaagttaagaagactcatgaacttccaagcacatgtaggcctaacgaaacgaagcacggtggcttctg |
200 |
Q |
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| T |
28667088 |
ttaattgatttcttgagttttctttctacacctaagttaagaagcctcatgaacttccaagcacacgtaggcataacgaaacgaagcacggtggcttctg |
28667187 |
T |
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| Q |
201 |
ttgcatcctcaaag |
214 |
Q |
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| T |
28667188 |
ttgcatcctcaaag |
28667201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 13897693 - 13897793
Alignment:
| Q |
43 |
caaagatagttccttttttctagtccttatgacattcattgcaaattcatcaacccctttaattgatttcttgagttttctttctacacctaagttaaga |
142 |
Q |
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|||||| ||||| || ||||| | |||||| |||||| |||||||||||||| || |||||||||||||| |||||||| | ||||||||||||| |
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| T |
13897693 |
caaagaaagttctttctttcttgcccttataacattctcagcaaattcatcaactttttgtattgatttcttgagctttctttccatacctaagttaaga |
13897792 |
T |
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| Q |
143 |
a |
143 |
Q |
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| T |
13897793 |
a |
13897793 |
T |
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